Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013566.1 Kokia drynarioides strain JFW-HI SEQ_128592, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3402
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34


Found at i:33 original size:12 final size:12

Alignment explanation


    Indices: 18--42  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

          8 AACACCCATG

                        
         18 GAAGAAGAGGAA
          1 GAAGAAGAGGAA

                        
         30 GAAGAAGAGGAA
          1 GAAGAAGAGGAA

             
         42 G
          1 G

         43 GAAATGAAGC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00


Consensus pattern (12 bp):   
GAAGAAGAGGAA
Done.