Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013574.1 Kokia drynarioides strain JFW-HI SEQ_128600, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3493
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.33


Found at i:317 original size:16 final size:17

Alignment explanation


    Indices: 279--324  Score: 51
    Period size: 16  Copynumber: 2.8  Consensus size: 17

        269 TGCCTTATCT

                *            
        279 TTATCTTATTTATATTC
          1 TTATTTTATTTATATTC

                              
        296 -TATTTTATTTAT-TTCC
          1 TTATTTTATTTATATT-C

              *          
        312 TTTTTTTATTTAT
          1 TTATTTTATTTAT

        325 CCATCTTCCA


Statistics
Matches: 25,  Mismatches: 2, Indels: 4
        0.81            0.06        0.13

Matches are distributed among these distances:
  15    2  0.08
  16   12  0.48
  17   11  0.44

ACGTcount: A:0.20, C:0.09, G:0.00, T:0.72


Consensus pattern (17 bp):   
TTATTTTATTTATATTC

Found at i:842 original size:21 final size:21

Alignment explanation


    Indices: 816--857  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        806 TTCCATTTGT

                                 
        816 TCCTGAATAGCATCTTACAAA
          1 TCCTGAATAGCATCTTACAAA

                                 
        837 TCCTGAATAGCATCTTACAAA
          1 TCCTGAATAGCATCTTACAAA

        858 AGGGTTTTTG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.38, C:0.24, G:0.10, T:0.29


Consensus pattern (21 bp):   
TCCTGAATAGCATCTTACAAA
Done.