genome.fa.s13580.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013580.1 Kokia drynarioides strain JFW-HI SEQ_128606, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  246016

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
604--670	4	16.2	4	74	11	55	2	29	0	67	1.06
604--670	20	3.5	18	74	18	64	2	29	0	67	1.06
1713--1740	6	4.7	6	100	0	56	32	0	67	0	0.91
2040--2089	26	1.9	26	84	8	66	32	4	4	60	1.34
3981--4177	5	39.6	5	72	7	107	40	15	21	22	1.90
4195--4273	15	5.3	15	73	0	50	35	13	22	27	1.93
4234--4283	25	2.0	25	84	7	66	38	12	20	30	1.88
7274--7405	43	3.1	43	82	5	169	36	10	23	29	1.88
7286--7426	42	3.3	42	84	1	183	33	11	24	31	1.90
11123--11157	16	2.2	16	90	5	54	8	8	34	48	1.64
17221--17260	22	1.9	22	85	10	57	42	17	15	25	1.88
20922--20976	26	2.1	26	93	0	92	47	3	7	41	1.49
21704--21735	13	2.3	15	89	10	50	31	6	0	62	1.20
21876--21908	13	2.4	14	90	10	50	42	3	0	54	1.15
25550--25593	17	2.7	16	83	13	54	65	2	6	25	1.28
41808--41878	35	2.0	35	97	0	133	42	12	16	28	1.85
43652--43703	19	2.6	19	81	6	59	65	1	0	32	1.04
46624--46679	15	3.3	16	83	14	60	73	0	0	26	0.84
46623--46680	10	6.6	9	77	20	52	74	0	0	25	0.82
46621--46800	19	9.9	17	69	20	84	64	3	1	31	1.17
46644--46800	8	18.5	8	74	19	74	63	3	1	31	1.20
46725--46808	10	9.0	10	71	15	56	63	3	1	32	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60967--61009	21	2.0	22	86	4	61	62	4	4	27	1.35
61518--61547	12	2.5	12	88	0	51	56	0	26	16	1.40
65480--65563	42	2.0	42	97	0	159	27	19	10	42	1.84
71235--71274	21	2.0	21	90	5	64	45	15	15	25	1.84
84557--84623	33	2.0	33	100	0	134	40	8	14	35	1.78
87270--87305	6	6.0	6	96	0	54	33	16	5	44	1.71
96510--96574	26	2.5	26	77	5	69	27	24	20	27	1.99
97794--97822	9	3.3	9	90	9	51	0	27	0	72	0.85
98963--99088	17	7.3	17	83	5	155	43	1	2	52	1.23
98963--99077	35	3.3	34	85	7	151	41	1	2	53	1.25
98994--99088	6	16.5	6	71	20	78	45	2	1	51	1.20
99014--99069	11	4.9	11	78	10	51	39	3	1	55	1.28
99738--99782	19	2.4	18	81	3	54	51	4	11	33	1.58
100816--101107	29	9.9	29	82	8	333	33	32	2	31	1.71
100824--101107	59	4.8	59	86	4	344	33	32	2	32	1.71
103244--103314	26	2.7	26	82	4	90	23	23	25	26	2.00
109789--109968	51	3.5	51	93	1	299	30	14	24	30	1.95
117022--117193	51	3.4	51	87	4	249	29	13	24	32	1.93
126109--126163	23	2.3	24	90	3	85	74	5	18	1	1.10
140250--140285	14	2.6	14	90	0	54	52	5	0	41	1.24
140251--140285	12	2.7	13	91	8	54	54	5	0	40	1.24
141118--141273	29	5.3	30	78	9	144	33	26	3	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141130--141248	59	2.0	60	82	7	147	36	27	2	33	1.71
141226--141295	28	2.5	28	83	6	79	38	18	1	41	1.60
141118--141295	29	6.1	27	76	13	117	33	25	3	37	1.73
150007--150036	2	15.0	2	100	0	60	50	0	0	50	1.00
155499--155551	24	2.2	24	83	10	63	13	37	1	47	1.54
162642--162711	35	2.0	35	100	0	140	28	2	17	51	1.59
170152--170183	9	3.6	9	100	0	64	90	0	0	9	0.45
176662--176717	15	3.7	15	82	0	67	30	25	25	19	1.98
178047--178071	13	1.9	13	100	0	50	24	16	12	48	1.79
187173--187332	23	7.0	23	86	0	221	46	12	5	35	1.63
187165--187336	69	2.5	69	88	2	258	46	13	4	34	1.65
189861--189916	6	9.5	6	86	7	71	0	16	1	82	0.76
214019--214056	3	12.7	3	100	0	76	31	0	0	68	0.90
220589--220824	41	5.7	41	92	0	346	24	25	9	41	1.84
221692--221733	22	1.9	22	85	0	57	35	11	0	52	1.38
229417--229453	19	2.1	19	90	10	60	0	13	0	86	0.57
229417--229455	11	3.5	11	82	6	51	0	15	0	84	0.62
229417--229455	17	2.3	17	86	8	53	0	15	0	84	0.62
230178--230224	21	2.2	21	85	7	60	2	31	12	53	1.51
238641--238908	133	2.0	133	96	0	491	26	24	14	34	1.94
239922--240190	41	6.5	41	85	3	297	25	26	9	37	1.87
242194--242218	11	2.3	11	100	0	50	40	8	16	36	1.77

Tables:   1

The End!