genome.fa.s13584.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013584.1 Kokia drynarioides strain JFW-HI SEQ_128611, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119834

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1438--1484	22	2.1	22	84	4	58	72	6	4	17	1.22
1489--1560	33	2.2	34	85	5	94	59	4	4	31	1.35
9040--9088	17	2.6	19	78	15	57	61	2	0	36	1.08
9187--9220	18	1.9	18	88	5	52	41	2	2	52	1.31
10532--10601	19	3.6	19	79	12	63	37	2	1	58	1.22
10559--10603	18	2.4	18	88	3	63	37	4	0	57	1.19
11145--11187	17	2.6	16	85	7	50	62	0	0	37	0.95
12877--12922	24	2.0	23	86	4	65	26	0	4	69	1.07
13761--13893	43	3.1	42	83	4	158	29	27	16	26	1.97
17616--17698	41	2.0	41	92	0	139	21	27	18	32	1.96
17643--17752	54	2.0	54	83	0	139	21	27	17	33	1.96
17697--17842	41	3.6	41	81	0	168	19	26	19	34	1.96
26793--26845	15	4.0	15	77	22	57	47	0	0	52	1.00
26794--26840	14	3.6	13	75	18	53	46	0	0	53	1.00
26894--26932	6	6.3	6	85	5	51	0	64	2	33	1.08
26894--26932	13	3.1	13	85	7	53	0	64	2	33	1.08
27953--27993	11	3.8	11	87	3	57	53	2	0	43	1.13
28692--28736	10	4.8	9	84	15	56	53	2	0	44	1.13
28699--28736	18	2.1	18	90	9	60	55	2	0	42	1.14
29181--29307	61	2.1	61	83	0	155	43	18	5	33	1.73
29801--29829	14	2.1	14	93	6	51	41	0	3	55	1.17
30717--30775	31	1.9	31	86	6	84	54	11	1	32	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31287--31327	3	13.7	3	100	0	82	68	0	31	0	0.90
33101--33161	28	2.1	29	81	6	79	29	9	24	36	1.88
33237--33431	59	3.3	58	82	5	223	34	5	24	35	1.79
33325--33460	29	4.6	28	76	11	123	36	5	22	36	1.77
33237--33456	59	3.7	57	81	8	221	35	5	24	35	1.78
34529--34600	3	24.0	3	85	5	101	34	0	1	63	1.03
35342--35405	17	3.8	16	72	13	56	50	4	4	40	1.44
35870--36124	121	2.1	121	89	0	384	20	20	23	36	1.95
36339--36612	78	3.5	78	85	4	329	27	17	27	28	1.97
36402--36619	39	5.6	39	68	20	141	27	16	28	27	1.97
36679--36872	101	1.9	101	84	0	262	28	17	18	36	1.93
37075--37474	49	8.1	49	69	9	197	15	25	20	38	1.92
37271--37497	100	2.3	100	87	2	332	17	24	19	38	1.92
37314--37474	50	3.2	49	65	12	112	18	25	18	37	1.93
43098--43289	96	2.0	96	84	6	255	39	13	17	30	1.88
43641--43863	29	7.7	30	75	11	171	36	4	24	35	1.74
43641--43869	59	3.9	59	79	10	238	36	3	24	35	1.74
44936--44986	3	17.0	3	100	0	102	33	0	0	66	0.92
47621--47650	3	10.0	3	100	0	60	0	33	0	66	0.92
52658--52701	21	2.0	22	82	4	54	36	25	22	15	1.94
52691--52760	21	3.4	21	67	9	63	30	21	34	14	1.93
53515--53539	8	3.1	8	100	0	50	0	40	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60558--60758	100	2.0	100	96	0	366	21	17	37	22	1.94
69597--69729	51	2.6	51	87	1	187	24	15	25	34	1.95
69589--69736	25	5.9	25	79	5	138	23	14	25	35	1.93
76713--76789	29	2.7	29	91	0	118	41	19	6	32	1.77
78776--78850	20	3.8	20	79	10	91	73	17	2	6	1.17
78776--78845	9	7.2	9	77	15	59	72	17	2	7	1.19
81247--81396	74	2.0	75	87	6	216	46	10	3	39	1.55
87361--87409	19	2.6	19	80	3	64	55	12	12	20	1.68
90111--90140	15	1.9	16	93	6	53	46	20	0	33	1.51
93450--93487	14	2.8	13	88	7	58	39	0	0	60	0.97
95716--95912	58	3.4	58	79	10	224	39	1	23	36	1.64
95716--95902	30	6.5	28	80	11	200	39	1	22	36	1.64
95716--95902	28	6.5	28	78	14	168	39	1	22	36	1.64
96917--96964	16	2.8	18	75	6	55	33	0	0	66	0.92
96979--97033	24	2.3	25	75	9	60	38	3	9	49	1.52
97737--97814	6	13.3	6	73	15	65	51	5	2	41	1.38
97737--97781	17	2.6	17	93	6	74	46	6	0	46	1.29
97732--97814	11	7.2	11	74	12	60	50	6	2	40	1.40
98190--98788	202	3.0	201	91	1	979	23	24	18	33	1.96
110827--111160	29	11.4	29	70	20	148	38	2	24	35	1.69
110814--111160	88	4.0	88	80	5	393	38	2	24	34	1.70
110827--111160	59	5.8	56	73	16	236	38	2	24	35	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110913--111189	117	2.4	116	79	10	289	38	2	23	35	1.68
110913--111189	58	4.7	57	75	10	215	38	2	23	35	1.68
112243--112306	3	20.0	3	75	12	56	34	3	3	59	1.29
113048--113102	6	9.3	6	86	9	78	49	3	0	47	1.19
113043--113095	17	3.1	17	86	0	70	49	3	0	47	1.19
113048--113102	23	2.3	23	93	3	92	49	3	0	47	1.19
113043--113094	11	4.6	11	92	4	77	48	3	0	48	1.20
115090--115271	96	1.9	96	83	6	235	37	10	19	31	1.86
115628--115761	30	4.6	28	78	14	128	32	0	27	40	1.57
115612--115759	30	5.0	30	74	15	123	33	0	27	38	1.62
115629--115761	59	2.3	58	85	7	173	32	0	27	39	1.57
116777--116863	3	28.0	3	69	11	50	34	2	6	56	1.39
116777--116868	15	5.7	15	68	14	58	34	3	6	55	1.42
116790--116846	20	2.9	20	80	14	66	33	1	8	56	1.41
116811--116860	21	2.4	20	83	12	57	34	2	8	56	1.40
117544--117619	6	13.2	6	69	13	52	52	2	2	42	1.29
117544--117619	17	4.4	17	75	8	73	52	2	2	42	1.29
117951--118420	206	2.3	205	83	5	613	23	22	18	36	1.95
118240--118601	182	2.0	182	94	0	634	22	22	20	35	1.96
118420--118874	207	2.2	206	94	0	784	22	22	20	34	1.97
118035--118809	389	2.0	388	89	2	1180	22	22	20	35	1.96

Tables:   1

The End!