Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013586.1 Kokia drynarioides strain JFW-HI SEQ_128613, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3417
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36


Found at i:125 original size:6 final size:6

Alignment explanation


    Indices: 114--141  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

        104 TAAAAGAGGA

                                            
        114 AAAAAG AAAAAG AAAAAG AAAAAG AAAA
          1 AAAAAG AAAAAG AAAAAG AAAAAG AAAA

        142 TCCAAAAATT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00


Consensus pattern (6 bp):   
AAAAAG

Found at i:2921 original size:23 final size:25

Alignment explanation


    Indices: 2890--2945  Score: 62
    Period size: 26  Copynumber: 2.3  Consensus size: 25

       2880 CTTTGATAAC

                *            *     * 
       2890 AGTTGTTAG-AAG-TCAGTTGTGTT
          1 AGTTATTAGTAAGCTCAATTGTGAT

                                      
       2913 AGTTATTAGTTAAGCTCAATTGTGAT
          1 AGTTATTAG-TAAGCTCAATTGTGAT

                   
       2939 AGTTATT
          1 AGTTATT

       2946 GGAGTCTGTT


Statistics
Matches: 27,  Mismatches: 3, Indels: 3
        0.82            0.09        0.09

Matches are distributed among these distances:
  23    8  0.30
  25    3  0.11
  26   16  0.59

ACGTcount: A:0.27, C:0.05, G:0.23, T:0.45


Consensus pattern (25 bp):   
AGTTATTAGTAAGCTCAATTGTGAT
Done.