genome.fa.s13594.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013594.1 Kokia drynarioides strain JFW-HI SEQ_128621, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  188289

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1897--2037	43	3.3	43	85	0	210	22	21	28	27	1.99
2038--2174	43	3.2	43	80	1	150	29	16	24	29	1.97
3500--3544	3	15.0	3	90	0	63	0	6	26	66	1.16
5480--5633	30	5.2	30	76	8	100	37	24	1	36	1.67
5567--5671	30	3.5	28	83	10	102	35	24	0	39	1.62
5499--5664	90	1.8	89	81	7	201	35	24	1	37	1.66
5585--5672	30	2.9	31	86	6	110	34	27	2	36	1.70
6609--6636	8	3.5	8	100	0	56	89	0	10	0	0.49
10051--10192	73	1.9	73	95	0	257	33	3	28	35	1.74
10838--10909	24	3.0	24	81	2	72	26	13	11	48	1.76
12553--12603	24	2.1	24	85	0	66	23	11	5	58	1.55
12570--12615	24	1.9	24	86	0	65	26	13	8	52	1.69
25017--25154	34	4.2	34	80	10	162	27	26	23	22	2.00
25014--25154	17	8.6	17	63	9	60	26	25	24	22	2.00
27722--27931	90	2.4	89	91	1	332	26	5	11	56	1.57
31219--31475	117	2.2	116	81	9	287	43	15	9	31	1.80
31655--31907	116	2.2	113	82	9	286	42	15	9	32	1.79
31646--31919	115	2.4	113	80	9	292	43	15	9	31	1.80
31898--31994	51	1.9	51	82	4	124	29	19	18	31	1.96
32591--32631	22	1.9	22	90	5	66	53	0	0	46	1.00
37850--37924	36	2.1	36	97	0	141	50	17	16	16	1.78
40255--40289	15	2.4	14	86	9	52	82	0	8	8	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41149--41654	93	5.4	92	74	13	430	33	17	21	27	1.95
41095--41653	186	3.0	183	85	2	760	34	16	21	27	1.95
43598--43641	18	2.4	18	80	3	52	18	6	2	72	1.17
44739--44793	22	2.5	22	81	0	65	29	9	0	61	1.26
45097--45151	26	2.1	26	89	3	83	49	5	16	29	1.68
52621--52800	37	4.9	37	86	1	218	13	20	32	33	1.92
57884--57921	19	2.0	19	94	0	67	34	26	7	31	1.85
57978--58058	30	2.7	30	84	5	83	30	6	14	48	1.69
57999--58058	30	2.0	30	90	0	93	28	6	15	50	1.69
58004--58067	30	2.1	30	85	5	85	31	9	12	46	1.73
66274--66325	21	2.5	21	100	0	104	23	32	32	11	1.90
71558--71746	26	7.3	26	79	5	195	33	22	18	25	1.97
71558--71746	78	2.4	78	85	5	240	33	22	18	25	1.97
71554--71765	26	8.2	26	81	1	111	33	22	19	24	1.97
71558--71782	78	2.9	78	81	4	204	32	24	19	24	1.97
71633--71761	52	2.5	52	85	0	177	32	24	20	22	1.98
79356--79406	12	4.8	12	81	13	51	78	5	0	15	0.93
79377--79405	9	3.0	10	90	10	51	79	0	0	20	0.74
79365--79407	15	2.8	15	80	16	52	74	4	0	20	1.00
84234--84268	14	2.4	14	95	4	61	85	0	14	0	0.59
84234--84268	17	2.1	18	89	10	56	85	0	14	0	0.59
85936--86348	42	9.7	42	86	2	461	33	28	15	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85951--86306	166	2.1	170	86	2	486	33	30	14	21	1.93
86312--86497	93	2.0	93	94	0	327	33	22	22	20	1.97
86885--86914	14	2.1	15	93	6	53	13	0	3	83	0.77
94885--94930	22	2.1	21	84	15	58	34	10	2	52	1.49
99081--99219	43	3.3	42	80	7	138	29	17	23	29	1.97
100615--100675	28	2.3	26	83	11	70	37	4	6	50	1.50
101010--101050	22	1.9	21	85	5	55	36	2	4	56	1.34
102299--102333	17	2.1	17	94	0	61	34	5	17	42	1.73
103702--103746	14	3.2	15	81	6	51	24	53	11	11	1.68
105507--105538	16	2.0	17	88	11	50	3	12	12	71	1.25
110299--110448	74	2.0	74	98	0	291	28	14	24	32	1.94
118333--118358	7	3.7	7	100	0	52	0	15	0	84	0.62
120365--120447	15	5.4	14	75	16	58	2	25	0	72	0.97
120374--120447	10	8.1	9	70	28	50	2	27	0	70	1.01
120365--120447	25	3.2	25	77	15	80	2	25	0	72	0.97
120384--120441	13	4.5	13	73	26	61	1	25	0	72	0.94
120387--120452	19	3.5	19	71	22	66	3	25	0	71	1.01
120371--120447	38	2.0	38	100	0	154	2	25	0	71	0.99
120396--120438	23	1.9	22	95	4	77	2	25	0	72	0.97
121021--121062	17	2.4	18	88	4	59	57	14	11	16	1.66
121021--121074	18	3.1	18	86	2	65	57	14	11	16	1.65
121476--121507	15	2.1	15	94	0	55	0	37	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123343--123392	16	3.1	16	86	11	66	76	2	10	12	1.11
148697--148732	18	2.1	18	89	5	56	75	2	11	11	1.16
148714--148751	15	2.5	16	79	12	53	78	5	2	13	1.02
159803--159828	10	2.6	10	100	0	52	73	0	19	7	1.07
179506--179557	12	4.2	12	80	9	59	1	34	0	63	1.06

Tables:   1

The End!