genome.fa.s13596.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013596.1 Kokia drynarioides strain JFW-HI SEQ_128623, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  172030

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427--665	52	4.6	52	84	1	282	36	23	15	23	1.94
13352--13441	36	2.5	36	96	0	171	41	11	26	21	1.86
14218--14249	16	2.0	16	100	0	64	37	31	25	6	1.81
41717--41761	23	2.0	23	91	8	74	22	22	8	46	1.79
46718--46778	30	2.0	30	100	0	122	21	9	13	55	1.66
58195--58319	29	4.3	29	77	6	101	25	12	14	48	1.78
60861--60914	28	1.9	28	81	7	65	40	5	16	37	1.72
66621--67348	102	7.1	102	81	3	734	36	17	17	28	1.93
66694--67366	306	2.2	306	84	2	879	36	17	18	28	1.93
67319--67471	50	3.1	50	66	12	116	37	19	17	25	1.94
67323--67572	100	2.5	100	81	3	297	38	18	18	25	1.93
67845--68137	102	2.9	102	82	4	349	36	19	16	27	1.93
68056--68214	77	2.1	77	87	0	228	33	18	17	29	1.94
67955--68313	179	2.0	179	85	3	490	36	18	16	28	1.93
68134--68423	102	2.8	102	83	0	346	36	16	17	28	1.92
67853--68415	281	2.0	281	83	3	704	36	18	16	28	1.93
68375--68630	100	2.6	100	79	3	284	34	18	19	26	1.96
69301--69341	22	1.9	22	90	5	66	14	34	17	34	1.90
70212--70252	14	3.0	14	82	7	57	21	12	2	63	1.40
70785--70823	16	2.4	16	83	12	53	30	2	7	58	1.39
72474--72503	15	2.1	15	93	6	53	40	13	6	40	1.71
74712--74742	16	1.9	16	93	0	53	41	9	3	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76925--77149	72	3.1	72	87	0	351	31	10	23	35	1.89
76925--77136	36	5.9	36	86	0	316	30	11	23	34	1.90
77544--77864	23	14.0	23	86	0	426	33	4	14	47	1.64
79972--80000	14	2.1	14	100	0	58	72	20	0	6	1.07
80365--80446	26	3.2	26	70	6	76	36	17	15	30	1.91
80347--80513	52	3.2	52	77	1	183	35	20	14	28	1.93
83278--83442	83	2.0	83	96	2	305	42	12	23	21	1.87
85688--85735	22	2.2	21	77	3	51	50	0	14	35	1.44
86537--86755	41	5.3	42	79	10	202	38	9	25	26	1.86
86538--86734	41	4.8	41	85	3	234	37	9	25	27	1.87
86538--86759	82	2.7	83	85	4	288	38	9	25	27	1.86
92755--92809	6	8.7	6	76	11	56	76	1	18	3	1.02
97988--98025	18	2.1	19	85	5	51	28	7	2	60	1.38
98375--99606	610	2.0	614	87	3	1793	35	16	11	36	1.84
100401--100512	34	3.3	33	86	2	152	44	14	8	32	1.76
119724--119768	21	2.1	21	95	0	81	46	8	24	20	1.78
121111--121161	21	2.4	21	87	12	70	27	27	15	29	1.96
121922--122211	52	5.6	52	91	0	422	34	21	14	28	1.93
128953--129001	20	2.3	21	82	6	64	42	10	0	46	1.37
135317--135347	9	3.4	9	95	0	53	38	0	0	61	0.96
136180--136542	200	1.8	200	82	3	471	30	19	21	29	1.97
139585--139713	24	5.4	24	85	3	170	28	21	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139585--139739	24	6.5	24	84	1	168	27	20	21	30	1.98
144071--144245	24	7.4	24	90	1	273	25	21	24	28	1.99
146693--146717	9	2.8	9	100	0	50	20	12	44	24	1.85
154734--154769	18	2.0	18	100	0	72	33	16	22	27	1.95
159653--159760	31	3.4	30	76	17	78	48	2	1	47	1.27
161489--161549	23	2.6	24	84	5	79	19	32	18	29	1.95

Tables:   1

The End!