Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013603.1 Kokia drynarioides strain JFW-HI SEQ_128630, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 904

Length: 1507
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.38


Found at i:1432 original size:2 final size:2

Alignment explanation


    Indices: 1420--1451  Score: 57
    Period size: 2  Copynumber: 16.5  Consensus size: 2

       1410 CTTTATTCTT

                                                             
       1420 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1452 TAGTTAGTAA


Statistics
Matches: 29,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   28  0.97

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (2 bp):   
TA

Done.