genome.fa.s13608.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013608.1 Kokia drynarioides strain JFW-HI SEQ_128635, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80044

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2868--2927	30	2.0	29	96	3	111	40	13	0	46	1.43
4459--4624	24	6.9	24	81	0	179	25	25	15	34	1.94
4459--4624	48	3.5	48	86	1	208	25	25	15	34	1.94
7455--7707	122	2.0	124	88	3	375	49	15	2	32	1.57
8470--8555	40	2.2	40	97	2	165	53	11	0	34	1.37
10255--10299	18	2.3	20	81	14	67	40	4	6	48	1.49
10262--10301	18	2.2	18	95	0	71	37	5	7	50	1.53
10372--10424	18	2.7	19	80	11	54	56	0	1	41	1.10
20486--20633	24	5.6	25	76	11	104	34	24	30	10	1.89
20477--20788	30	11.2	27	79	12	156	32	25	29	13	1.94
20543--20760	30	7.4	30	90	3	334	31	23	30	14	1.94
20755--20812	24	2.4	24	82	0	71	32	25	29	12	1.92
21657--21708	19	2.8	19	80	8	54	69	1	1	26	1.10
29628--29748	61	2.0	61	98	0	233	27	23	15	33	1.95
34191--34237	2	24.0	2	91	4	78	48	0	2	48	1.13
36141--36180	18	2.3	18	86	4	55	37	0	5	57	1.21
38258--38763	254	2.0	254	90	2	811	32	18	11	37	1.86
41093--41154	30	2.1	30	90	6	99	25	4	12	56	1.56
43745--43789	2	22.5	2	100	0	90	51	0	0	48	1.00
54596--54826	59	3.8	58	73	14	182	25	16	9	49	1.75
54567--54837	124	2.2	124	84	7	356	23	16	9	49	1.76
54764--54924	86	1.9	87	88	2	245	22	21	5	50	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57114--57153	18	2.2	18	86	0	53	25	7	45	22	1.78
57126--57177	24	2.2	24	86	6	70	19	5	53	21	1.65
58075--58122	13	3.8	13	76	20	57	60	0	0	39	0.97
58080--58122	18	2.3	18	84	11	52	60	0	0	39	0.97
67015--67133	43	2.8	42	84	5	148	19	19	31	29	1.96
68327--68847	30	17.8	29	70	13	248	37	4	25	32	1.76
68326--68576	58	4.3	59	82	4	294	37	5	24	32	1.77
68320--68574	117	2.2	118	83	8	340	37	5	24	32	1.77
68293--68576	58	4.8	58	80	5	279	36	5	25	32	1.79
68562--68812	57	4.3	56	82	7	261	38	3	26	32	1.72
68562--68812	116	2.2	116	81	7	296	38	3	26	32	1.72
69963--70001	3	13.0	3	100	0	78	33	0	0	66	0.92
70656--70704	24	2.1	22	88	11	71	48	0	0	51	1.00
70663--70749	6	15.0	6	71	15	51	50	1	0	48	1.08
70672--70749	17	4.6	17	85	4	95	51	1	0	47	1.09
71164--71535	49	7.6	49	79	6	378	16	27	18	36	1.93
71122--71535	99	4.2	98	83	2	501	16	26	19	37	1.93
71122--71535	49	8.5	48	76	6	357	16	26	19	37	1.93

Tables:   1

The End!