Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013609.1 Kokia drynarioides strain JFW-HI SEQ_128636, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2984
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29


Found at i:1513 original size:45 final size:45

Alignment explanation


    Indices: 1395--1531  Score: 193
    Period size: 45  Copynumber: 3.0  Consensus size: 45

       1385 GGGAGGAATA

                  *   *              *  *           **   
       1395 GAGTATCGCGATGGCTCGTCAAACTCAGCCTGATATCCTTCCCTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT

                                   *                     
       1440 GAGTATTGCGGTGGCTCGTCAAATTGAGGCTGATATCCTTGGCTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT

                                           *      *      
       1485 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTAATATCCATGGCTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT

              
       1530 GA
          1 GA

       1532 TGAGCTATGC


Statistics
Matches: 82,  Mismatches: 10, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  45   82  1.00

ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30


Consensus pattern (45 bp):   
GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT
Done.