Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013616.1 Kokia drynarioides strain JFW-HI SEQ_128644, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4198
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:2648 original size:24 final size:24

Alignment explanation


    Indices: 2621--2676  Score: 67
    Period size: 24  Copynumber: 2.3  Consensus size: 24

       2611 GTATGAACTG

                    *    **      * *
       2621 GCAATGCACAACTTGCAAGAGCTT
          1 GCAATGCAAAACTCACAAGAGATC

                                    
       2645 GCAATGCAAAACTCACAAGAGATC
          1 GCAATGCAAAACTCACAAGAGATC

                    
       2669 GCAATGCA
          1 GCAATGCA

       2677 TAATTCGTAA


Statistics
Matches: 27,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.39, C:0.25, G:0.20, T:0.16


Consensus pattern (24 bp):   
GCAATGCAAAACTCACAAGAGATC

Found at i:3086 original size:23 final size:23

Alignment explanation


    Indices: 3067--3205  Score: 242
    Period size: 23  Copynumber: 6.0  Consensus size: 23

       3057 AATCAGTAGT

                 *                 
       3067 CACACAAAGTGCGAAACAGTAAG
          1 CACACGAAGTGCGAAACAGTAAG

                *             *    
       3090 CACATGAAGTGCGAAACAATAAG
          1 CACACGAAGTGCGAAACAGTAAG

                                   
       3113 CACACGAAGTGCGAAACAGTAAG
          1 CACACGAAGTGCGAAACAGTAAG

                       *           
       3136 CACACGAAGTGTGAAACAGTAAG
          1 CACACGAAGTGCGAAACAGTAAG

                                   
       3159 CACACGAAGTGCGAAACAGTAAG
          1 CACACGAAGTGCGAAACAGTAAG

                                   
       3182 CACACGAAGTGCGAAACAGTAAG
          1 CACACGAAGTGCGAAACAGTAAG

             
       3205 C
          1 C

       3206 GCGCTAGCAT


Statistics
Matches: 109,  Mismatches: 7, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  23  109  1.00

ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10


Consensus pattern (23 bp):   
CACACGAAGTGCGAAACAGTAAG

Done.