Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013622.1 Kokia drynarioides strain JFW-HI SEQ_128650, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5502
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.37


Found at i:921 original size:34 final size:34

Alignment explanation


    Indices: 878--947  Score: 131
    Period size: 34  Copynumber: 2.1  Consensus size: 34

        868 TAGCCCTAGC

                                *             
        878 AAGTTCTTATTTTTCAGTCTTACTCAACCACTGG
          1 AAGTTCTTATTTTTCAGTCTGACTCAACCACTGG

                                              
        912 AAGTTCTTATTTTTCAGTCTGACTCAACCACTGG
          1 AAGTTCTTATTTTTCAGTCTGACTCAACCACTGG

              
        946 AA
          1 AA

        948 AATCGAATTA


Statistics
Matches: 35,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  34   35  1.00

ACGTcount: A:0.26, C:0.23, G:0.13, T:0.39


Consensus pattern (34 bp):   
AAGTTCTTATTTTTCAGTCTGACTCAACCACTGG

Found at i:2858 original size:20 final size:19

Alignment explanation


    Indices: 2818--2860  Score: 52
    Period size: 20  Copynumber: 2.2  Consensus size: 19

       2808 AATATTGATG

                                
       2818 AAACATTTAAATCATTCTTT
          1 AAACATTTAAATCA-TCTTT

                                 
       2838 AAACATTTAAGATC-TCGTTT
          1 AAACATTTAA-ATCATC-TTT

               
       2858 AAA
          1 AAA

       2861 TGAACCAATC


Statistics
Matches: 21,  Mismatches: 0, Indels: 4
        0.84            0.00        0.16

Matches are distributed among these distances:
  19    2  0.10
  20   16  0.76
  21    3  0.14

ACGTcount: A:0.42, C:0.14, G:0.05, T:0.40


Consensus pattern (19 bp):   
AAACATTTAAATCATCTTT
Done.