Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013631.1 Kokia drynarioides strain JFW-HI SEQ_128659, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7164
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:667 original size:17 final size:17

Alignment explanation


    Indices: 645--677  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        635 AAATATATAT

                   *         
        645 ATATTTTTAAAATTAAC
          1 ATATTTTAAAAATTAAC

                            
        662 ATATTTTAAAAATTAA
          1 ATATTTTAAAAATTAA

        678 ACAGCAAGAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45


Consensus pattern (17 bp):   
ATATTTTAAAAATTAAC

Found at i:3643 original size:23 final size:23

Alignment explanation


    Indices: 3627--3713  Score: 124
    Period size: 23  Copynumber: 3.8  Consensus size: 23

       3617 TTTACACATT

                                    
       3627 AATCACAT-TAACTTTTAAGCATA
          1 AATCACATAT-ACTTTTAAGCATA

              *                    
       3650 AACCACATATACTTTTAAGCATA
          1 AATCACATATACTTTTAAGCATA

            *                       
       3673 GATCACAT-TAACTTTTAAGCATA
          1 AATCACATAT-ACTTTTAAGCATA

                              
       3696 AATCACATATACTTTTAA
          1 AATCACATATACTTTTAA

       3714 CTCATTTAAT


Statistics
Matches: 57,  Mismatches: 4, Indels: 6
        0.85            0.06        0.09

Matches are distributed among these distances:
  22    1  0.02
  23   54  0.95
  24    2  0.04

ACGTcount: A:0.43, C:0.18, G:0.05, T:0.34


Consensus pattern (23 bp):   
AATCACATATACTTTTAAGCATA
Done.