Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013633.1 Kokia drynarioides strain JFW-HI SEQ_128661, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1890
ACGTcount: A:0.29, C:0.13, G:0.07, T:0.29

Warning! 418 characters in sequence are not A, C, G, or T


Found at i:757 original size:21 final size:20

Alignment explanation


    Indices: 728--768  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 20

        718 TTCTTACATT

                        *        
        728 TCTTCTTTCTTTCTTTCTTTC
          1 TCTTCTTTCTTTATTT-TTTC

                *               
        749 TCTTTTTTCTTTATTTTTTC
          1 TCTTCTTTCTTTATTTTTTC

        769 CTTAATTTTT


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  20    4  0.22
  21   14  0.78

ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76


Consensus pattern (20 bp):   
TCTTCTTTCTTTATTTTTTC
Done.