genome.fa.s13639.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013639.1 Kokia drynarioides strain JFW-HI SEQ_128667, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62291

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
946--981	18	2.0	18	100	0	72	50	11	11	27	1.72
2053--2108	11	5.0	11	77	14	53	46	0	0	53	1.00
2053--2110	6	10.2	6	75	17	61	46	0	0	53	1.00
2053--2110	17	3.4	17	85	4	82	46	0	0	53	1.00
2906--3014	12	9.1	12	69	19	50	53	2	5	38	1.39
4093--4180	30	2.9	30	81	6	97	36	22	2	38	1.67
4163--4588	29	14.7	29	73	16	289	33	26	4	34	1.78
4163--4439	88	3.2	87	76	14	239	33	25	5	35	1.79
4163--4588	59	7.3	58	80	9	383	33	26	4	34	1.78
4217--4588	88	4.3	86	77	11	285	34	26	4	34	1.78
4456--4588	57	2.4	56	82	14	168	32	28	3	35	1.75
15779--15813	18	1.9	18	88	0	52	20	8	11	60	1.57
16251--16928	49	13.8	48	72	11	326	39	19	23	17	1.92
16251--16858	98	6.2	98	79	6	460	39	18	24	17	1.92
16350--16858	147	3.4	144	76	7	441	40	18	23	17	1.91
17304--17415	17	6.4	17	80	12	129	44	0	1	53	1.11
17304--17413	11	10.0	11	69	15	59	44	0	1	53	1.11
17420--17452	15	2.2	15	94	0	57	54	18	3	24	1.57
18267--18344	6	13.0	6	79	15	90	55	0	0	44	0.99
18260--18343	38	2.2	37	84	14	109	55	0	0	44	0.99
18267--18344	13	6.5	12	83	15	90	55	0	0	44	0.99
18287--18344	19	3.1	19	100	0	116	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18909--19296	30	13.1	28	68	16	146	36	25	2	35	1.69
18914--19354	29	14.9	28	68	19	159	35	24	2	36	1.70
18914--19409	59	8.4	59	76	10	390	35	23	3	37	1.72
18978--19414	119	3.7	118	77	9	408	34	24	4	36	1.75
18914--19437	119	4.4	116	76	8	377	34	24	4	36	1.74
19394--19455	28	2.2	28	88	0	88	30	27	11	30	1.91
27232--27274	15	2.6	18	78	17	56	41	0	0	58	0.98
27232--27277	17	2.8	16	83	12	58	39	0	0	60	0.97
28395--28442	23	2.2	21	81	7	51	58	4	2	35	1.29
28930--29001	28	2.8	24	75	15	72	59	2	4	33	1.31
35665--35720	17	3.2	17	82	7	60	73	0	0	26	0.84
35666--35760	8	11.6	8	69	15	61	68	0	1	30	0.97
35667--35771	41	2.5	41	79	13	108	68	0	0	29	1.02
35666--35755	25	3.7	23	78	19	78	67	0	1	31	0.98
35671--35749	39	2.0	39	82	4	97	67	0	1	31	0.99
38280--38366	11	7.5	11	69	12	50	27	1	8	63	1.30
40293--40539	113	2.1	117	83	4	315	26	17	13	42	1.86
40453--40597	77	1.9	77	85	0	200	24	15	16	42	1.87
40263--40573	37	8.2	37	71	7	165	25	15	15	44	1.85
41138--41334	77	2.6	76	73	4	189	26	17	11	44	1.82
41704--41769	32	2.1	32	97	0	123	12	31	6	50	1.64
42455--42508	28	2.0	27	85	10	74	51	5	3	38	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43533--43934	29	13.8	29	80	7	365	35	28	2	34	1.70
43533--43934	88	4.6	87	81	9	428	35	28	2	34	1.70
43564--43934	30	12.7	27	77	8	202	35	28	1	34	1.67
55967--56355	207	1.9	204	82	3	494	36	19	22	21	1.95
57283--57379	43	2.2	40	79	17	97	49	4	2	44	1.33
58380--58687	29	10.7	29	77	13	230	33	28	3	34	1.76
58375--58628	29	8.8	29	79	9	236	34	28	3	33	1.75
58380--58688	58	5.4	59	81	9	291	33	28	3	34	1.76
59964--60009	23	2.0	23	95	0	83	36	4	19	39	1.72
59981--60011	16	1.9	16	93	0	53	38	3	19	38	1.68

Tables:   1

The End!