Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013640.1 Kokia drynarioides strain JFW-HI SEQ_128668, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 94591
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Warning! 27 characters in sequence are not A, C, G, or T
Found at i:3546 original size:32 final size:32
Alignment explanation
Indices: 3481--3546 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
3471 AAGTTAATAT
**
3481 ATGATCATTTGCATTTTCTATGAAATATTATG
1 ATGATCATTTGCATTTTCTATGAAATACCATG
*
3513 ATGATCCTTTGCATTTTCTATGAAATACCATG
1 ATGATCATTTGCATTTTCTATGAAATACCATG
3545 AT
1 AT
3547 AATATTATTG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (32 bp):
ATGATCATTTGCATTTTCTATGAAATACCATG
Found at i:6503 original size:3 final size:3
Alignment explanation
Indices: 6497--6533 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
6487 CAAAAAAAAG
6497 AGA AGA AGA AGA AGA AGA AGA AGA AGA A-A AGA A-A AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
6534 TGAAAACCCG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 4 0.12
3 28 0.88
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:8588 original size:100 final size:98
Alignment explanation
Indices: 8389--8896 Score: 526
Period size: 99 Copynumber: 5.2 Consensus size: 98
8379 ACCATGAAAA
* * * *
8389 TGATGGGAAAGG-TTGAGGCTGCAACGGTGAACCCGGTACCAT-AAG--ATGAAAGGAAAGGTTG
1 TGATGGG-AAGGATTGAGGCTGCAACGGCGAA-TCAGTACCATGAAGATATGAAGGGAAAGGTTG
* * * *
8450 AGGCAGCAACGACT-AACCCGGTACCTTGGAAGATG
64 AGGCCGCAACG-GTGAACTCGGTACCTTAGAAGATG
* * * * *
8485 TGATGGGAAAGG-TTAAGGCTGCAACGACGAACTCAGTACCTTAGAAGATGTGATGGGAAAGGTT
1 TGATGGG-AAGGATTGAGGCTGCAACGGCGAA-TCAGTACCAT-GAAGATATGAAGGGAAAGGTT
* * * *
8549 GAGGCCGCACCGGTAAACTCGATACCTTAAAAGATG
63 GAGGCCGCAACGGTGAACTCGGTACCTTAGAAGATG
* ** * *
8585 TGATGGGAAGGATTGAGACCACAACGACGAATCTAGTACCATGAAGATATAAAAGGGAAAGGTTG
1 TGATGGGAAGGATTGAGGCTGCAACGGCGAATC-AGTACCATGAAGATAT-GAAGGGAAAGGTTG
* *
8650 ACGCCGCAACGGTGAACTCGGTACCTTAGAAGAGG
64 AGGCCGCAACGGTGAACTCGGTACCTTAGAAGATG
* * *
8685 TGATAGGAAGGATTGAGGCTGCAACGGCGAATCCAATACCATGAAGGTATGAAGGGAAAGGTTGA
1 TGATGGGAAGGATTGAGGCTGCAACGGCGAAT-CAGTACCATGAAGATATGAAGGGAAAGGTTGA
* * * * * * *
8750 GGTCGTAATGGTGAACCCGATAACTTAAAAGATG
65 GGCCGCAACGGTGAACTCGGTACCTTAGAAGATG
*
8784 TGATGGGAAGGATTGAGGCTGCAACGGTGAATCTAGTACCATGAAGATATGAAGGGAAAGGTTGA
1 TGATGGGAAGGATTGAGGCTGCAACGGCGAATC-AGTACCATGAAGATATGAAGGGAAAGGTTGA
* * * *
8849 GGTCGTAATGGCGAACTCGGTACCTTAGAAGATG
65 GGCCGCAACGGTGAACTCGGTACCTTAGAAGATG
8883 TGATGGGAA-GATTG
1 TGATGGGAAGGATTG
8897 TAACCGTCCA
Statistics
Matches: 346, Mismatches: 56, Indels: 18
0.82 0.13 0.04
Matches are distributed among these distances:
96 36 0.10
98 9 0.03
99 150 0.43
100 150 0.43
101 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.32, T:0.19
Consensus pattern (98 bp):
TGATGGGAAGGATTGAGGCTGCAACGGCGAATCAGTACCATGAAGATATGAAGGGAAAGGTTGAG
GCCGCAACGGTGAACTCGGTACCTTAGAAGATG
Found at i:8795 original size:99 final size:99
Alignment explanation
Indices: 8389--8896 Score: 537
Period size: 100 Copynumber: 5.2 Consensus size: 99
8379 ACCATGAAAA
* * * *
8389 TGATGGGAAAGG-TTGAGGCTGCAACGGTGAACCCGGTACCAT-AAG--ATGAAAGGAAAGGTTG
1 TGATGGG-AAGGATTGAGGCTGCAACGGCGAATCCAGTACCATGAAGATATGAAGGGAAAGGTTG
* * * *
8450 AGGCAGCAACGACT-AACCCGGTACCTTGGAAGATG
65 AGGCCGCAACG-GTGAACTCGGTACCTTAGAAGATG
* * * * *
8485 TGATGGGAAAGG-TTAAGGCTGCAACGACGAA-CTCAGTACCTTAGAAGATGTGATGGGAAAGGT
1 TGATGGG-AAGGATTGAGGCTGCAACGGCGAATC-CAGTACCAT-GAAGATATGAAGGGAAAGGT
* * * *
8548 TGAGGCCGCACCGGTAAACTCGATACCTTAAAAGATG
63 TGAGGCCGCAACGGTGAACTCGGTACCTTAGAAGATG
* ** * * *
8585 TGATGGGAAGGATTGAGACCACAACGACGAATCTAGTACCATGAAGATATAAAAGGGAAAGGTTG
1 TGATGGGAAGGATTGAGGCTGCAACGGCGAATCCAGTACCATGAAGATAT-GAAGGGAAAGGTTG
* *
8650 ACGCCGCAACGGTGAACTCGGTACCTTAGAAGAGG
65 AGGCCGCAACGGTGAACTCGGTACCTTAGAAGATG
* * *
8685 TGATAGGAAGGATTGAGGCTGCAACGGCGAATCCAATACCATGAAGGTATGAAGGGAAAGGTTGA
1 TGATGGGAAGGATTGAGGCTGCAACGGCGAATCCAGTACCATGAAGATATGAAGGGAAAGGTTGA
* * * * * * *
8750 GGTCGTAATGGTGAACCCGATAACTTAAAAGATG
66 GGCCGCAACGGTGAACTCGGTACCTTAGAAGATG
* *
8784 TGATGGGAAGGATTGAGGCTGCAACGGTGAATCTAGTACCATGAAGATATGAAGGGAAAGGTTGA
1 TGATGGGAAGGATTGAGGCTGCAACGGCGAATCCAGTACCATGAAGATATGAAGGGAAAGGTTGA
* * * *
8849 GGTCGTAATGGCGAACTCGGTACCTTAGAAGATG
66 GGCCGCAACGGTGAACTCGGTACCTTAGAAGATG
8883 TGATGGGAA-GATTG
1 TGATGGGAAGGATTG
8897 TAACCGTCCA
Statistics
Matches: 345, Mismatches: 58, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
95 1 0.00
96 35 0.10
98 8 0.02
99 149 0.43
100 151 0.44
101 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.32, T:0.19
Consensus pattern (99 bp):
TGATGGGAAGGATTGAGGCTGCAACGGCGAATCCAGTACCATGAAGATATGAAGGGAAAGGTTGA
GGCCGCAACGGTGAACTCGGTACCTTAGAAGATG
Found at i:8872 original size:49 final size:49
Alignment explanation
Indices: 8377--8891 Score: 256
Period size: 50 Copynumber: 10.5 Consensus size: 49
8367 GACGAACCTA
* *
8377 GTACCAT-GAA-A-ATGATGGGAAAGGTTGAGGCTGCAACGGTGAACCCG
1 GTACCATAGAAGATATGAAGGGAAAGGTTGAGGC-GCAACGGTGAACTCG
* * *
8424 GTACCAT--AAG--ATGAAAGGAAAGGTTGAGGCAGCAACGACT-AACCCG
1 GTACCATAGAAGATATGAAGGGAAAGGTTGAGGC-GCAACG-GTGAACTCG
* * * * * ** *
8470 GTACCTTGGAAGATGTGATGGGAAAGGTTAAGGCTGCAACGACGAACTCA
1 GTACCATAGAAGATATGAAGGGAAAGGTTGAGGC-GCAACGGTGAACTCG
* * * * *
8520 GTACCTTAGAAGATGTGATGGGAAAGGTTGAGGCCGCACCGGTAAACTCG
1 GTACCATAGAAGATATGAAGGGAAAGGTTGAGG-CGCAACGGTGAACTCG
* * * * * * * ** *
8570 ATACCTTAAAAGATGTGATGGG-AAGGATTGAGACCACAACGACGAA-TCTA
1 GTACCATAGAAGATATGAAGGGAAAGG-TTGAG-GCGCAACGGTGAACTC-G
* *
8620 GTACCAT-GAAGATATAAAAGGGAAAGGTTGACGCCGCAACGGTGAACTCG
1 GTACCATAGAAGATAT-GAAGGGAAAGGTTGA-GGCGCAACGGTGAACTCG
* ** * *
8670 GTACCTTAGAAGAGGTGATA-GG-AAGGATTGAGGCTGCAACGGCGAA-TCCA
1 GTACCATAGAAGATATGA-AGGGAAAGG-TTGAGGC-GCAACGGTGAACT-CG
* * * * *
8720 ATACCAT-GAAGGTATGAAGGGAAAGGTTGAGGTCGTAATGGTGAACCCG
1 GTACCATAGAAGATATGAAGGGAAAGGTTGAGG-CGCAACGGTGAACTCG
* * * * * * *
8769 ATAACTTAAAAGATGTGATGGG-AAGGATTGAGGCTGCAACGGTGAA-TCTA
1 GTACCATAGAAGATATGAAGGGAAAGG-TTGAGGC-GCAACGGTGAACTC-G
* * *
8819 GTACCAT-GAAGATATGAAGGGAAAGGTTGAGGTCGTAATGGCGAACTCG
1 GTACCATAGAAGATATGAAGGGAAAGGTTGAGG-CGCAACGGTGAACTCG
* * *
8868 GTACCTTAGAAGATGTGATGGGAA
1 GTACCATAGAAGATATGAAGGGAA
8892 GATTGTAACC
Statistics
Matches: 356, Mismatches: 80, Indels: 61
0.72 0.16 0.12
Matches are distributed among these distances:
46 38 0.11
47 8 0.02
48 4 0.01
49 85 0.24
50 206 0.58
51 15 0.04
ACGTcount: A:0.34, C:0.15, G:0.32, T:0.19
Consensus pattern (49 bp):
GTACCATAGAAGATATGAAGGGAAAGGTTGAGGCGCAACGGTGAACTCG
Found at i:9002 original size:38 final size:39
Alignment explanation
Indices: 8903--9884 Score: 432
Period size: 38 Copynumber: 25.4 Consensus size: 39
8893 ATTGTAACCG
*
8903 TCCAATCTCTTACCCC-AAC-TAGAGGGCAGATTGAAGACA
1 TCCAATCTCTTACCCCGATCAT-G-GGGCAGATTGAAGACA
*
8942 CTCCAATCTCTTACCCCGATCATGGGGCAGATCGAAG-CA
1 -TCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACA
* * *
8981 TCCGATCAT-TTACCCCAATCATGGGGTAGATT-AGAGACA
1 TCCAATC-TCTTACCCCGATCATGGGGCAGATTGA-AGACA
* *
9020 TCACCAATCTCTAACCTCGATCATGGGGCAGATTGAA-ACA
1 T--CCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACA
* * * *
9060 TCCGATCTTTTACCTCGATCATGAGGCAGATTGAAGACA
1 TCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACA
* * *
9099 CACCAATCTCTTACCCCAATCATGGGGCAGATTGAA-TCA
1 -TCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACA
* *** * *
9138 TTCAATCTCCTTACCTTAATCA-GAAGGTAGATTGAAGATACA
1 TCCAATCT-CTTACCCCGATCATG-GGGCAGATTGAAG--ACA
* * *
9180 -CCAATCTTTTAGCCCGATCATGGGGCAGATAGAAG-CA
1 TCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACA
* * * *
9217 -CGCAATCTTTTACCCCGAACATGGGGCAAATTGAAAATACA
1 TC-CAATCTCTTACCCCGATCATGGGGCAGATTG--AAGACA
* * * *
9258 T-GAATCTCTTTCCCCAATCATGGGACAGATTGAAG-CA
1 TCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACA
***** * * *
9295 TCCAATCTCTTATATTAATTA-GAAGGTAGATTGAAGACA
1 TCCAATCTCTTACCCCGATCATG-GGGCAGATTGAAGACA
* * * *
9334 CACCAATCTTTTACCCTGATCATGGGGCAAATT-ATAG-CA
1 -TCCAATCTCTTACCCCGATCATGGGGCAGATTGA-AGACA
* * *** * * *
9373 TCCAATTTTTTACCTTAATTA-GAAGGCAAATTGAAGAAACA
1 TCCAATCTCTTACCCCGATCATG-GGGCAGATTGAAG--ACA
** * *
9414 -CTGATCTCTTACCCTGATCATAGGGCAGATTGAAGA-A
1 TCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACA
*** * *
9451 TCCAATCTCTTACCTTAATCA-GAAGGCAGATTAAAGACA
1 TCCAATCTCTTACCCCGATCATG-GGGCAGATTGAAGACA
* *
9490 -CCAATCTCTTACCTCGATCATGAGGCAGATTGAAG-CA
1 TCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACA
* * * ** *
9527 TTCAATTTTTTACCCTAATCA-GAGGGCAAATTGAAGACA
1 TCCAATCTCTTACCCCGATCATG-GGGCAGATTGAAGACA
** *
9566 GGCAATCTCTTACCCCGATCATGGGGTAGATTGAAG-CA
1 TCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACA
* * *** **** *
9604 TTCAATCTTTTACCTTAATCAAAATGCAGATTGAAAACA
1 TCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACA
* **
9643 -CATCGATCTCTTACCCCGATCATGGGATAGATTGAAGA-A
1 TC--CAATCTCTTACCCCGATCATGGGGCAGATTGAAGACA
* * * * *
9682 TCCAATCTCTTATCTCAATTA-GAAGGCAGATTGAAGA-A
1 TCCAATCTCTTACCCCGATCATG-GGGCAGATTGAAGACA
* * *** * ** * *
9720 CCCAATCTCTTATCTTAACCA-GAAG-ATAGGTGAAGACA
1 TCCAATCTCTTACCCCGATCATGGGGCAGA-TTGAAGACA
* * * *
9758 ---AATCTCTTACCTCGATCATGAGGCAAATTGAA-TCA
1 TCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACA
* * ** * ** *
9793 TCCAATATTTTACCCTAATTAAAGGGCAGATTGAAGATA
1 TCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACA
** *
9832 AGCAATTTCTTACCCCGATCATGGGGCAGATTGAA-ACA
1 TCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACA
* *
9870 TTCAATCTTTTACCC
1 TCCAATCTCTTACCC
9885 TAATCAGAGG
Statistics
Matches: 700, Mismatches: 187, Indels: 112
0.70 0.19 0.11
Matches are distributed among these distances:
35 16 0.02
36 9 0.01
37 24 0.03
38 332 0.47
39 98 0.14
40 177 0.25
41 40 0.06
42 4 0.01
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (39 bp):
TCCAATCTCTTACCCCGATCATGGGGCAGATTGAAGACA
Found at i:9182 original size:157 final size:154
Alignment explanation
Indices: 8903--9731 Score: 784
Period size: 157 Copynumber: 5.3 Consensus size: 154
8893 ATTGTAACCG
* * * *
8903 TCCAATCTCTTACCCCAA-CTAGAGGGCAGATTGAAGACACTCCAATCTCTTACCCCGATCATGG
1 TCCAATCTTTTACCTCAATC-AGA-GGCAAATTGAAGACACACCAATCTCTTACCCCGATCATGG
* * ** *
8967 GGCAGATCGAAGCATCCGATCAT-TTACCCCAATCATG-GGGTAGATT-AGAGACATCACCAATC
64 GGCAGATTGAAGCATCCAATC-TCTTACCTTAATCA-GAAGGTAGATTGA-AGACA-CACCAATC
* *
9029 TCTAACCTCGATCATGGGGCAGATTGAAACA
125 TCTTACC-CGATCATGGGGCAGATTGAAGCA
* * * *
9060 TCCGATCTTTTACCTCGATCATGAGGCAGATTGAAGACACACCAATCTCTTACCCCAATCATGGG
1 TCCAATCTTTTACCTCAATCA-GAGGCAAATTGAAGACACACCAATCTCTTACCCCGATCATGGG
* * * *
9125 GCAGATTGAATCATTCAATCTCCTTACCTTAATCAGAAGGTAGATTGAAGATACACCAATCTTTT
65 GCAGATTGAAGCATCCAATCT-CTTACCTTAATCAGAAGGTAGATTGAAGACACACCAATCTCTT
*
9190 AGCCCGATCATGGGGCAGATAGAAGCA
129 A-CCCGATCATGGGGCAGATTGAAGCA
* * * * ** * *
9217 -CGCAATCTTTTACCCCGAA-CATGGGGCAAATTGAAAATACATGAATCTCTTTCCCCAATCATG
1 TC-CAATCTTTTACCTC-AATCA-GAGGCAAATTGAAGACACACCAATCTCTTACCCCGATCATG
* ** * *
9280 GGACAGATTGAAGCATCCAATCTCTTATATTAATTAGAAGGTAGATTGAAGACACACCAATCTTT
63 GGGCAGATTGAAGCATCCAATCTCTTACCTTAATCAGAAGGTAGATTGAAGACACACCAATCTCT
*
9345 TACCCTGATCATGGGGCAAATT-ATAGCA
128 TACCC-GATCATGGGGCAGATTGA-AGCA
* * * * ** * *
9373 TCCAATTTTTTACCTTAATTAGAAGGCAAATTGAAGAAACACTGATCTCTTACCCTGATCATAGG
1 TCCAATCTTTTACCTCAATCAG-AGGCAAATTGAAGACACACCAATCTCTTACCCCGATCATGGG
* * *
9438 GCAGATTGAAGAATCCAATCTCTTACCTTAATCAGAAGGCAGATT-AA-AGACACCAATCTCTTA
65 GCAGATTGAAGCATCCAATCTCTTACCTTAATCAGAAGGTAGATTGAAGACACACCAATCTCTTA
*
9501 CCTCGATCATGAGGCAGATTGAAGCA
130 CC-CGATCATGGGGCAGATTGAAGCA
* * **
9527 TTCAATTTTTTACC-CTAATCAGAGGGCAAATTGAAGACA-GGCAATCTCTTACCCCGATCATGG
1 TCCAATCTTTTACCTC-AATCAGA-GGCAAATTGAAGACACACCAATCTCTTACCCCGATCATGG
* * * * * * * * *
9590 GGTAGATTGAAGCATTCAATCTTTTACCTTAATCAAAATGCAGATTGAAAACACATCGATCTCTT
64 GGCAGATTGAAGCATCCAATCTCTTACCTTAATCAGAAGGTAGATTGAAGACACACCAATCTCTT
** *
9655 ACCCCGATCATGGGATAGATTGAAGAA
129 A-CCCGATCATGGGGCAGATTGAAGCA
* * * *
9682 TCCAATCTCTTATCTCAATTAGAAGGCAGATTGAAGA-AC-CCAATCTCTTA
1 TCCAATCTTTTACCTCAATCAG-AGGCAAATTGAAGACACACCAATCTCTTA
9732 TCTTAACCAG
Statistics
Matches: 557, Mismatches: 91, Indels: 51
0.80 0.13 0.07
Matches are distributed among these distances:
153 59 0.11
154 79 0.14
155 70 0.13
156 147 0.26
157 173 0.31
158 28 0.05
159 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (154 bp):
TCCAATCTTTTACCTCAATCAGAGGCAAATTGAAGACACACCAATCTCTTACCCCGATCATGGGG
CAGATTGAAGCATCCAATCTCTTACCTTAATCAGAAGGTAGATTGAAGACACACCAATCTCTTAC
CCGATCATGGGGCAGATTGAAGCA
Found at i:9278 original size:78 final size:79
Alignment explanation
Indices: 8903--9731 Score: 580
Period size: 78 Copynumber: 10.7 Consensus size: 79
8893 ATTGTAACCG
* * *
8903 TCCAATCTCTTACCCC-AA-C-TAGAGGGCAGATTGAAGACACTCCAATCTCTTACCCCGATCAT
1 TCCAATCTTTTACCCCGAATCAT-GA-GGCAGATTGAAGATACACCAATCTCTTACCCCGATCAT
*
8965 GGGGCAGATCGAAGCA
64 GGGGCAGATTGAAGCA
* * * * * * *
8981 TCCGATCATTTACCCC-AATCATGGGGTAGATT-AGAGACATCACCAATCTCTAACCTCGATCAT
1 TCCAATCTTTTACCCCGAATCATGAGGCAGATTGA-AGATA-CACCAATCTCTTACCCCGATCAT
*
9044 GGGGCAGATTGAAACA
64 GGGGCAGATTGAAGCA
* * * *
9060 TCCGATCTTTTACCTCG-ATCATGAGGCAGATTGAAGACACACCAATCTCTTACCCCAATCATGG
1 TCCAATCTTTTACCCCGAATCATGAGGCAGATTGAAGATACACCAATCTCTTACCCCGATCATGG
*
9124 GGCAGATTGAATCA
66 GGCAGATTGAAGCA
* * ** * * *
9138 TTCAATCTCCTTA-CCTTAATCA-GAAGGTAGATTGAAGATACACCAATCTTTTAGCCCGATCAT
1 TCCAATCT-TTTACCCCGAATCATG-AGGCAGATTGAAGATACACCAATCTCTTACCCCGATCAT
*
9201 GGGGCAGATAGAAGCA
64 GGGGCAGATTGAAGCA
* * * ** * *
9217 -CGCAATCTTTTACCCCGAA-CATGGGGCAAATTGAAAATACATGAATCTCTTTCCCCAATCATG
1 TC-CAATCTTTTACCCCGAATCATGAGGCAGATTGAAGATACACCAATCTCTTACCCCGATCATG
*
9280 GGACAGATTGAAGCA
65 GGGCAGATTGAAGCA
* **** * * * * *
9295 TCCAATCTCTTA-TATTAATTA-GAAGGTAGATTGAAGACACACCAATCTTTTACCCTGATCATG
1 TCCAATCTTTTACCCCGAATCATG-AGGCAGATTGAAGATACACCAATCTCTTACCCCGATCATG
*
9358 GGGCAAATT-ATAGCA
65 GGGCAGATTGA-AGCA
* ** * * * ** * *
9373 TCCAATTTTTTA-CCTTAATTA-GAAGGCAAATTGAAGAAACACTGATCTCTTACCCTGATCATA
1 TCCAATCTTTTACCCCGAATCATG-AGGCAGATTGAAGATACACCAATCTCTTACCCCGATCATG
*
9436 GGGCAGATTGAAGAA
65 GGGCAGATTGAAGCA
* ** * *
9451 TCCAATCTCTTA-CCTTAATCA-GAAGGCAGATT-AA-AGACACCAATCTCTTACCTCGATCATG
1 TCCAATCTTTTACCCCGAATCATG-AGGCAGATTGAAGATACACCAATCTCTTACCCCGATCATG
*
9512 AGGCAGATTGAAGCA
65 GGGCAGATTGAAGCA
* * * * *
9527 TTCAATTTTTTA-CCCTAATCA-GAGGGCAAATTGAAG--ACAGGCAATCTCTTACCCCGATCAT
1 TCCAATCTTTTACCCCGAATCATGA-GGCAGATTGAAGATACA-CCAATCTCTTACCCCGATCAT
*
9588 GGGGTAGATTGAAGCA
64 GGGGCAGATTGAAGCA
* ** ** * * * * *
9604 TTCAATCTTTTA-CCTTAATCAAAATGCAGATTGAAAACACATCGATCTCTTACCCCGATCATGG
1 TCCAATCTTTTACCCCGAATCATGAGGCAGATTGAAGATACACCAATCTCTTACCCCGATCATGG
** *
9668 GATAGATTGAAGAA
66 GGCAGATTGAAGCA
* * * *
9682 TCCAATCTCTTATCTC-AATTA-GAAGGCAGATTGAAGA-AC-CCAATCTCTTA
1 TCCAATCTTTTACCCCGAATCATG-AGGCAGATTGAAGATACACCAATCTCTTA
9732 TCTTAACCAG
Statistics
Matches: 605, Mismatches: 120, Indels: 54
0.78 0.15 0.07
Matches are distributed among these distances:
75 1 0.00
76 71 0.12
77 72 0.12
78 319 0.53
79 140 0.23
80 2 0.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (79 bp):
TCCAATCTTTTACCCCGAATCATGAGGCAGATTGAAGATACACCAATCTCTTACCCCGATCATGG
GGCAGATTGAAGCA
Found at i:9384 original size:156 final size:155
Alignment explanation
Indices: 8946--9689 Score: 674
Period size: 156 Copynumber: 4.8 Consensus size: 155
8936 AAGACACTCC
* * * ** *
8946 AATCTCTTACCCCGATCATGGGGCAGATCGAAGCATCCGATCAT-TTACCCCAATCATG-GGGTA
1 AATCTCTTACCCCAATCATGGGGCAGATTGAAGCATCCAATC-TCTTACCTTAATCA-GAAGGTA
* * * *
9009 GATT-AGAGACATCACCAATC-TCTAACCTCGATCATGGGGCAGATTGAAACATCCGATCTTTTA
64 GATTGA-AGACA-CACCAATCTTTTACCCT-GATCATGGGGCAGATTGAAGCATCCAATCTTTTA
* * * **
9072 CCTCGATCATG-AGGCAGATTGAAGACACACC
126 CC-CGAACATGAAGGCAAATTGAA-AAACATG
* *
9103 AATCTCTTACCCCAATCATGGGGCAGATTGAATCATTCAATCTCCTTACCTTAATCAGAAGGTAG
1 AATCTCTTACCCCAATCATGGGGCAGATTGAAGCATCCAATCT-CTTACCTTAATCAGAAGGTAG
* *
9168 ATTGAAGATACACCAATCTTTTAGCCC-GATCATGGGGCAGATAGAAGCA-CGCAATCTTTTACC
65 ATTGAAGACACACCAATCTTTTA-CCCTGATCATGGGGCAGATTGAAGCATC-CAATCTTTTA-C
*
9231 CCGAACATG-GGGCAAATTGAAAATACATG
127 CCGAACATGAAGGCAAATTGAAAA-ACATG
* * ** *
9260 AATCTCTTTCCCCAATCATGGGACAGATTGAAGCATCCAATCTCTTATATTAATTAGAAGGTAGA
1 AATCTCTTACCCCAATCATGGGGCAGATTGAAGCATCCAATCTCTTACCTTAATCAGAAGGTAGA
* * **
9325 TTGAAGACACACCAATCTTTTACCCTGATCATGGGGCAAATT-ATAGCATCCAATTTTTTACCTT
66 TTGAAGACACACCAATCTTTTACCCTGATCATGGGGCAGATTGA-AGCATCCAATCTTTTACCCG
*
9389 AA-TTAGAAGGCAAATTGAAGAAACACTG
130 AACAT-GAAGGCAAATTGAA-AAACA-TG
** * * *
9417 -ATCTCTTACCCTGATCATAGGGCAGATTGAAGAATCCAATCTCTTACCTTAATCAGAAGGCAGA
1 AATCTCTTACCCCAATCATGGGGCAGATTGAAGCATCCAATCTCTTACCTTAATCAGAAGGTAGA
* * * * * *
9481 TT-AA-AGACACCAATCTCTTA-CCTCGATCATGAGGCAGATTGAAGCATTCAATTTTTTACCCT
66 TTGAAGACACACCAATCTTTTACCCT-GATCATGGGGCAGATTGAAGCATCCAATCTTTTACCCG
* * *
9543 AATCA-GAGGGCAAATTG-AAGACAGG
130 AA-CATGAAGGCAAATTGAAAAACATG
* * * * * * *
9568 CAATCTCTTACCCCGATCATGGGGTAGATTGAAGCATTCAATCTTTTACCTTAATCAAAATGCAG
1 -AATCTCTTACCCCAATCATGGGGCAGATTGAAGCATCCAATCTCTTACCTTAATCAGAAGGTAG
* * * * * ** *
9633 ATTGAAAACACATCGATCTCTTACCCCGATCATGGGATAGATTGAAGAATCCAATCT
65 ATTGAAGACACACCAATCTTTTACCCTGATCATGGGGCAGATTGAAGCATCCAATCT
9690 CTTATCTCAA
Statistics
Matches: 489, Mismatches: 73, Indels: 52
0.80 0.12 0.08
Matches are distributed among these distances:
151 1 0.00
152 4 0.01
153 62 0.13
154 62 0.13
155 49 0.10
156 142 0.29
157 139 0.28
158 27 0.06
159 3 0.01
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (155 bp):
AATCTCTTACCCCAATCATGGGGCAGATTGAAGCATCCAATCTCTTACCTTAATCAGAAGGTAGA
TTGAAGACACACCAATCTTTTACCCTGATCATGGGGCAGATTGAAGCATCCAATCTTTTACCCGA
ACATGAAGGCAAATTGAAAAACATG
Found at i:9907 original size:77 final size:77
Alignment explanation
Indices: 9762--9908 Score: 195
Period size: 77 Copynumber: 1.9 Consensus size: 77
9752 AAGACAAATC
* * * * * *
9762 TCTTACCTCGATCATGAGGCAAATTGAATCATCCAATATTTTACCCTAATTAAAGGGCAGATTGA
1 TCTTACCCCGATCATGAGGCAAATTGAAACATCCAATATTTTACCCTAATCAAAGGGAAAATTAA
9827 AGATAAGCAATT
66 AGATAAGCAATT
* * * * *
9839 TCTTACCCCGATCATGGGGCAGATTGAAACATTCAATCTTTTACCCTAATCAGAGGGAAAATTAA
1 TCTTACCCCGATCATGAGGCAAATTGAAACATCCAATATTTTACCCTAATCAAAGGGAAAATTAA
9904 AGATA
66 AGATA
9909 CATCATTTGA
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
77 59 1.00
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (77 bp):
TCTTACCCCGATCATGAGGCAAATTGAAACATCCAATATTTTACCCTAATCAAAGGGAAAATTAA
AGATAAGCAATT
Found at i:15444 original size:3 final size:3
Alignment explanation
Indices: 15436--15477 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
15426 TTGGTCTTCC
15436 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
15478 GATTGACATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:15580 original size:36 final size:36
Alignment explanation
Indices: 15535--15612 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 36
15525 TGATAAGATT
*
15535 ATATATTTTA-ATTATATT-TAATAATTCAAATAA-AAA
1 ATATTTTTTACATTA-ATTATAATAATT-AAA-AATAAA
*
15571 ATATTTTTTACATTAATTATTATAATTAAAAATAAA
1 ATATTTTTTACATTAATTATAATAATTAAAAATAAA
15607 ATATTT
1 ATATTT
15613 AAAAAATAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
35 2 0.05
36 24 0.65
37 11 0.30
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (36 bp):
ATATTTTTTACATTAATTATAATAATTAAAAATAAA
Found at i:17419 original size:101 final size:101
Alignment explanation
Indices: 17230--17422 Score: 239
Period size: 101 Copynumber: 1.9 Consensus size: 101
17220 GTAACAAGGT
* * * * *
17230 ACAGGAGACACACGGGCATGTGCTAGACCGTGTGTGTTTATTGTTTGGTGACACACGGTCGTGTG
1 ACAGGAGACACACAGGCATGTCCTAGACCGTGTGTGTATACTGCTTGGTGACACACGGTCGTGTG
*
17295 TCAGACCGTATGTGTATACTATTTTGGAAATAACGA
66 TCAGACCGTATGTGCATACTATTTTGGAAATAACGA
* * *
17331 ACAGGGGACACGCAGGCATGTCCTAGACTGTGTGTGTATACTGCCTTGG-GACACACGAG-CGTG
1 ACAGGAGACACACAGGCATGTCCTAGACCGTGTGTGTATACTG-CTTGGTGACACACG-GTCGTG
* *
17394 TGTCAGACCGTGTG-GACATATTATTTTGG
64 TGTCAGACCGTATGTG-CATACTATTTTGG
17423 CATTTTGGTT
Statistics
Matches: 78, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
100 1 0.01
101 72 0.92
102 5 0.06
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (101 bp):
ACAGGAGACACACAGGCATGTCCTAGACCGTGTGTGTATACTGCTTGGTGACACACGGTCGTGTG
TCAGACCGTATGTGCATACTATTTTGGAAATAACGA
Found at i:17824 original size:40 final size:40
Alignment explanation
Indices: 17677--17865 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
17667 CATTAGAACA
* ** *
17677 ACTGAACTGACAGTGACACTGTAAACATTGCATTATTATT
1 ACTGAACTGACAGTGACACTGTAAACACTGCAACATTACT
* * * * *
17717 ATTGAATTGGCAGTGACACTGTAAACACTTCGACATTACT
1 ACTGAACTGACAGTGACACTGTAAACACTGCAACATTACT
* * *
17757 ATTGAACTGCCAGTGACGCTGTAAACACTGCAACATTACT
1 ACTGAACTGACAGTGACACTGTAAACACTGCAACATTACT
* * ***
17797 ACTGAATTGACAGTGACATTGTAAACACTGCGGTATTACT
1 ACTGAACTGACAGTGACACTGTAAACACTGCAACATTACT
* *
17837 ACT-AGACTGACGGTGACACTATAAACACT
1 ACTGA-ACTGACAGTGACACTGTAAACACT
17866 ACAATAATAT
Statistics
Matches: 122, Mismatches: 26, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
39 1 0.01
40 121 0.99
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (40 bp):
ACTGAACTGACAGTGACACTGTAAACACTGCAACATTACT
Found at i:17835 original size:80 final size:80
Alignment explanation
Indices: 17679--17865 Score: 223
Period size: 80 Copynumber: 2.3 Consensus size: 80
17669 TTAGAACAAC
* ** * * *
17679 TGAACTGACAGTGACACTGTAAACATTGCATTATTATTATTGAATTGGCAGTGACACTGTAAACA
1 TGAACTGACAGTGACACTGTAAACACTGCAACATTACTACTGAATTGACAGTGACACTGTAAACA
*
17744 CTTCGACATTACTAT
66 CTGCGACATTACTAT
* * *
17759 TGAACTGCCAGTGACGCTGTAAACACTGCAACATTACTACTGAATTGACAGTGACATTGTAAACA
1 TGAACTGACAGTGACACTGTAAACACTGCAACATTACTACTGAATTGACAGTGACACTGTAAACA
** *
17824 CTGCGGTATTACTAC
66 CTGCGACATTACTAT
* *
17839 T-AGACTGACGGTGACACTATAAACACT
1 TGA-ACTGACAGTGACACTGTAAACACT
17866 ACAATAATAT
Statistics
Matches: 89, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
79 1 0.01
80 88 0.99
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (80 bp):
TGAACTGACAGTGACACTGTAAACACTGCAACATTACTACTGAATTGACAGTGACACTGTAAACA
CTGCGACATTACTAT
Found at i:23407 original size:59 final size:59
Alignment explanation
Indices: 23332--23462 Score: 156
Period size: 59 Copynumber: 2.2 Consensus size: 59
23322 CACAAAGGCT
** *
23332 CTCACATATAATAGGTTTCACCACTAAGGCTCACATATAATA-AAGGACAGCCAAAAAAG
1 CTCACATATACCAGGTTTCACCACTAAGGCTCACATATAACAGAA-GACAGCCAAAAAAG
** * * * * *
23391 CTCACATATACCAGGTTTTGCCACTATGGCTCACATATAACAGAATATAGCCACAAAGG
1 CTCACATATACCAGGTTTCACCACTAAGGCTCACATATAACAGAAGACAGCCAAAAAAG
23450 CTCACATATACCA
1 CTCACATATACCA
23463 AAACAGCCAC
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
59 59 0.97
60 2 0.03
ACGTcount: A:0.40, C:0.25, G:0.13, T:0.22
Consensus pattern (59 bp):
CTCACATATACCAGGTTTCACCACTAAGGCTCACATATAACAGAAGACAGCCAAAAAAG
Found at i:23423 original size:29 final size:30
Alignment explanation
Indices: 23380--23476 Score: 92
Period size: 30 Copynumber: 3.3 Consensus size: 30
23370 AATAAAGGAC
* * * *
23380 AGCCAAAAAAGCTCACATATACCAG-GTTT
1 AGCCACAAAGGCTCACATATACCAGAATAT
* * * *
23409 TGCCACTATGGCTCACATATAACAGAATAT
1 AGCCACAAAGGCTCACATATACCAGAATAT
*
23439 AGCCACAAAGGCTCACATATACCA-AA-AC
1 AGCCACAAAGGCTCACATATACCAGAATAT
23467 AGCCACAAAG
1 AGCCACAAAG
23477 ACTTACACAT
Statistics
Matches: 54, Mismatches: 13, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
28 11 0.20
29 21 0.39
30 22 0.41
ACGTcount: A:0.42, C:0.27, G:0.13, T:0.18
Consensus pattern (30 bp):
AGCCACAAAGGCTCACATATACCAGAATAT
Found at i:23452 original size:30 final size:29
Alignment explanation
Indices: 23317--23476 Score: 90
Period size: 30 Copynumber: 5.4 Consensus size: 29
23307 GTAATAGTGA
* **
23317 ACAGCCACAAAGGCTCTCACATATAATAGGTT
1 ACAGCCACAAAGG--CTCACATATAACA-AAT
* * * *
23349 TCA-CCACTAAGGCTCACATATAATAAAGG
1 ACAGCCACAAAGGCTCACATATAACAAA-T
* * * **
23378 ACAGCCAAAAAAGCTCACATATACCAGGT
1 ACAGCCACAAAGGCTCACATATAACAAAT
*** * *
23407 TTTGCCACTATGGCTCACATATAACAGAAT
1 ACAGCCACAAAGGCTCACATATAACA-AAT
* *
23437 ATAGCCACAAAGGCTCACATATACCAAA-
1 ACAGCCACAAAGGCTCACATATAACAAAT
23465 ACAGCCACAAAG
1 ACAGCCACAAAG
23477 ACTTACACAT
Statistics
Matches: 95, Mismatches: 30, Indels: 10
0.70 0.22 0.07
Matches are distributed among these distances:
28 11 0.12
29 35 0.37
30 39 0.41
31 8 0.08
32 2 0.02
ACGTcount: A:0.41, C:0.26, G:0.14, T:0.19
Consensus pattern (29 bp):
ACAGCCACAAAGGCTCACATATAACAAAT
Found at i:29040 original size:109 final size:111
Alignment explanation
Indices: 28887--29101 Score: 274
Period size: 110 Copynumber: 2.0 Consensus size: 111
28877 TAAAGAACAC
*** * *
28887 TTATCGATTTTAAAATAGGATGTTCAATTACTTAGGTTCCAAG-AAAAATCATA-CTCAATACGT
1 TTATCGATTTTAAAATAGGATACCCAATTACTTAGGTTCAAAGAAAAAATCATACCT-AACACGT
* * *
28950 TAGGGCACAATTTTTTGAGTTCCATAAAATAAAAGAACATTAAGCGT
65 TAGGGCACAATTTCTCGAATTCCATAAAATAAAAGAACATTAAGCGT
* * *
28997 TTATTGATTTT-AAATAGGATACCCAATTATTTAGGTTCAAAGAAAAAATCGTACCTAACACGTT
1 TTATCGATTTTAAAATAGGATACCCAATTACTTAGGTTCAAAGAAAAAATCATACCTAACACGTT
* * *
29061 AGTGCACAATTTCTCGAATTCCCTAAAATAAAATAACATTA
66 AGGGCACAATTTCTCGAATTCCATAAAATAAAAGAACATTA
29102 CCTTGATATT
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
109 26 0.29
110 61 0.69
111 2 0.02
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.33
Consensus pattern (111 bp):
TTATCGATTTTAAAATAGGATACCCAATTACTTAGGTTCAAAGAAAAAATCATACCTAACACGTT
AGGGCACAATTTCTCGAATTCCATAAAATAAAAGAACATTAAGCGT
Found at i:29335 original size:17 final size:18
Alignment explanation
Indices: 29301--29339 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
29291 ATAAAGTGAT
29301 AAAATGATTAAATTTTAAA
1 AAAATGATTAAA-TTTAAA
29320 AAAATGATTAAA-TTAAA
1 AAAATGATTAAATTTAAA
29337 AAA
1 AAA
29340 TATATAAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 8 0.40
19 12 0.60
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (18 bp):
AAAATGATTAAATTTAAA
Found at i:29763 original size:19 final size:18
Alignment explanation
Indices: 29741--29783 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
29731 AATGAGTGGT
*
29741 AAATTTAAAAAAACAAAAA
1 AAATTGAAAAAAA-AAAAA
* *
29760 AAATAGAAAAAAAAAAAC
1 AAATTGAAAAAAAAAAAA
29778 AAATTG
1 AAATTG
29784 CAAGCATTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.77, C:0.05, G:0.05, T:0.14
Consensus pattern (18 bp):
AAATTGAAAAAAAAAAAA
Found at i:30387 original size:2 final size:2
Alignment explanation
Indices: 30382--30416 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
30372 TAAAAAAATA
30382 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
30417 CTCTCAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:32331 original size:26 final size:28
Alignment explanation
Indices: 32291--32362 Score: 80
Period size: 26 Copynumber: 2.7 Consensus size: 28
32281 AATGGTAGGT
* *
32291 AATTAATTTATTTATTTTATATGTT-TA
1 AATTTATTTAATTATTTTATATGTTATA
* *
32318 GATTT-TTTAATTATTTTA-ATTTTATA
1 AATTTATTTAATTATTTTATATGTTATA
32344 AATTTATTTAATT-TTTTAT
1 AATTTATTTAATTATTTTAT
32363 TTATTTTATG
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
25 4 0.11
26 23 0.62
27 10 0.27
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (28 bp):
AATTTATTTAATTATTTTATATGTTATA
Found at i:32361 original size:8 final size:8
Alignment explanation
Indices: 32314--32361 Score: 51
Period size: 9 Copynumber: 5.5 Consensus size: 8
32304 ATTTTATATG
32314 TTTAGATTT
1 TTTA-ATTT
32323 TTTAATTAT
1 TTTAATT-T
32332 TTTAATTT
1 TTTAATTT
*
32340 TATAAATTT
1 T-TTAATTT
32349 ATTTAATTT
1 -TTTAATTT
32358 TTTA
1 TTTA
32362 TTTATTTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
8 9 0.26
9 24 0.71
10 1 0.03
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (8 bp):
TTTAATTT
Found at i:32657 original size:28 final size:28
Alignment explanation
Indices: 32617--32712 Score: 192
Period size: 28 Copynumber: 3.4 Consensus size: 28
32607 AAATATATCT
32617 TAAATAAATTATTTTTAGACTCAATTTC
1 TAAATAAATTATTTTTAGACTCAATTTC
32645 TAAATAAATTATTTTTAGACTCAATTTC
1 TAAATAAATTATTTTTAGACTCAATTTC
32673 TAAATAAATTATTTTTAGACTCAATTTC
1 TAAATAAATTATTTTTAGACTCAATTTC
32701 TAAATAAATTAT
1 TAAATAAATTAT
32713 AATTATCTAA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 68 1.00
ACGTcount: A:0.42, C:0.09, G:0.03, T:0.46
Consensus pattern (28 bp):
TAAATAAATTATTTTTAGACTCAATTTC
Found at i:34284 original size:17 final size:19
Alignment explanation
Indices: 34262--34296 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
34252 TATATTTTAT
34262 AAAATTGA-A-AATAAAAA
1 AAAATTGATATAATAAAAA
34279 AAAATTGATATAATAAAA
1 AAAATTGATATAATAAAA
34297 TTTATTGGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 1 0.06
19 7 0.44
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (19 bp):
AAAATTGATATAATAAAAA
Found at i:34636 original size:19 final size:20
Alignment explanation
Indices: 34598--34643 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
34588 TAAGGTTTGT
*
34598 TTTAATTATTTTTAGTATAA
1 TTTAATTATTTTTAATATAA
34618 -TTAATTA-TTTTAATAATAA
1 TTTAATTATTTTTAAT-ATAA
34637 TTTAATT
1 TTTAATT
34644 TTATTAAAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 6 0.26
19 11 0.48
20 6 0.26
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (20 bp):
TTTAATTATTTTTAATATAA
Found at i:37393 original size:18 final size:19
Alignment explanation
Indices: 37351--37393 Score: 61
Period size: 21 Copynumber: 2.2 Consensus size: 19
37341 ACGTGCTCAT
37351 CAAGTTCATGCAAATATTTTA
1 CAAGTTCATGCAAATA--TTA
37372 CAAGTTCATGCAAATA-TA
1 CAAGTTCATGCAAATATTA
37390 CAAG
1 CAAG
37394 AATGAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.27
21 16 0.73
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (19 bp):
CAAGTTCATGCAAATATTA
Found at i:37509 original size:70 final size:70
Alignment explanation
Indices: 37387--37569 Score: 321
Period size: 70 Copynumber: 2.6 Consensus size: 70
37377 TCATGCAAAT
* *
37387 ATACAAGAATGAAATTTCAACATAAAGTGGGATACATAATAATTCAACTTTATATAAATAATTGA
1 ATACAAGAATGAAATTTCAACACAAAGTGGGATACATAATAATGCAACTTTATATAAATAATTGA
37452 AGTTG
66 AGTTG
* * *
37457 ATACAAGAATGAAATTTAAACACAAAGTGGGGTACATAATAATGCAAGTTTATATAAATAATTGA
1 ATACAAGAATGAAATTTCAACACAAAGTGGGATACATAATAATGCAACTTTATATAAATAATTGA
37522 AGTTG
66 AGTTG
37527 ATACAAGAATGAAATTTCAACACAAAGTGGGATACATAATAAT
1 ATACAAGAATGAAATTTCAACACAAAGTGGGATACATAATAAT
37570 TTACAAAGTG
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 106 1.00
ACGTcount: A:0.48, C:0.09, G:0.15, T:0.28
Consensus pattern (70 bp):
ATACAAGAATGAAATTTCAACACAAAGTGGGATACATAATAATGCAACTTTATATAAATAATTGA
AGTTG
Found at i:41392 original size:52 final size:52
Alignment explanation
Indices: 41303--41592 Score: 347
Period size: 52 Copynumber: 5.6 Consensus size: 52
41293 TTCCCATTTA
* *
41303 ATACTCACGATGACACAAAGTCATCAGACCTTA-AATCCGTAAAAAGA-TCTAT
1 ATACTCACGATGACACATAGTCATCAGACCTCATAATCCGT-AAAAGATTC-AT
* * *
41355 ATGCTCATGATGACACATAGTCATCAGACC-CTTAATCCGTAAAAGATTCAT
1 ATACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAAAGATTCAT
** *
41406 ATACTCACGATGACACATAGTCATTGGACCTCATAATCCGTAAATGATTCAT
1 ATACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAAAGATTCAT
* * * *
41458 ATACTCACGATGACACATAATCAAT-AGACCTCATATTCCGTTAAGGATTCAT
1 ATACTCACGATGACACATAGTC-ATCAGACCTCATAATCCGTAAAAGATTCAT
* * *
41510 ATACTCACGATGAAACATAGTCATTAGACCTCATAATCCGT-AAAGAAATCAT
1 ATACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAAAG-ATTCAT
* * *
41562 ATATTCATGATGACACATAGTCATCGGACCT
1 ATACTCACGATGACACATAGTCATCAGACCT
41593 TTTTCATTTA
Statistics
Matches: 206, Mismatches: 26, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
51 39 0.19
52 165 0.80
53 2 0.01
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.27
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAAAGATTCAT
Found at i:46102 original size:56 final size:56
Alignment explanation
Indices: 46014--46127 Score: 183
Period size: 56 Copynumber: 2.0 Consensus size: 56
46004 GACCATGAAA
46014 GCACAATTGCCATCGCACAAGGAGGCTCATGTGGCCTAGGGTGGCTGACAAAGGAG
1 GCACAATTGCCATCGCACAAGGAGGCTCATGTGGCCTAGGGTGGCTGACAAAGGAG
* * * **
46070 GCACAATTGCCATCGCACAAGGAGGTTTATGTGGCCTAGGGTGGTTGAGTAAGGAG
1 GCACAATTGCCATCGCACAAGGAGGCTCATGTGGCCTAGGGTGGCTGACAAAGGAG
46126 GC
1 GC
46128 TCATGAGTTA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.25, C:0.20, G:0.35, T:0.19
Consensus pattern (56 bp):
GCACAATTGCCATCGCACAAGGAGGCTCATGTGGCCTAGGGTGGCTGACAAAGGAG
Found at i:50099 original size:18 final size:18
Alignment explanation
Indices: 50066--50100 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50056 TTTTAGATAT
**
50066 AATTTTTTATTTTTTATG
1 AATTTTTTATGATTTATG
50084 AATTTTTTATGATTTAT
1 AATTTTTTATGATTTAT
50101 CTAATGTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (18 bp):
AATTTTTTATGATTTATG
Found at i:54268 original size:47 final size:47
Alignment explanation
Indices: 54184--54278 Score: 129
Period size: 47 Copynumber: 2.0 Consensus size: 47
54174 CGGGATGACT
* * * **
54184 AAGTTATCAAAATTGGCAATCGGGATGGCTAGGTTATTGTAGTAAAA
1 AAGTCATCAAAATGGGCAATCAGGATGGCTAAATTATTGTAGTAAAA
54231 AAGTCATCAAAATCGGGCAATCAGGATGG-TAAATTATTGTAGTAAAA
1 AAGTCATCAAAAT-GGGCAATCAGGATGGCTAAATTATTGTAGTAAAA
54278 A
1 A
54279 TCATCGTAAC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
47 29 0.69
48 13 0.31
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.27
Consensus pattern (47 bp):
AAGTCATCAAAATGGGCAATCAGGATGGCTAAATTATTGTAGTAAAA
Found at i:54584 original size:16 final size:15
Alignment explanation
Indices: 54544--54583 Score: 62
Period size: 16 Copynumber: 2.6 Consensus size: 15
54534 CATTAAAAAT
54544 AACCCAAAATACCCA
1 AACCCAAAATACCCA
*
54559 ATACACAAAATACCCA
1 A-ACCCAAAATACCCA
54575 AACCCAAAA
1 AACCCAAAA
54584 ACCATACAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.57, C:0.35, G:0.00, T:0.07
Consensus pattern (15 bp):
AACCCAAAATACCCA
Found at i:55972 original size:13 final size:14
Alignment explanation
Indices: 55951--55985 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
55941 ATTTTTTCCC
55951 TATTATATTTCCTA
1 TATTATATTTCCTA
55965 TATT-TATTTCCTA
1 TATTATATTTCCTA
55978 T-TTATATT
1 TATTATATT
55986 CTTAATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 2 0.10
13 14 0.70
14 4 0.20
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (14 bp):
TATTATATTTCCTA
Found at i:59328 original size:18 final size:19
Alignment explanation
Indices: 59288--59335 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
59278 TAGCTCATTT
*
59288 GAGCATACTGGCTCGTCTA
1 GAGCATACTGGCTCGTCAA
*
59307 -AGCATATTGGCTCGT-AA
1 GAGCATACTGGCTCGTCAA
59324 GAGCATTACTGG
1 GAGCA-TACTGG
59336 GTTCGCAAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 1 0.04
18 18 0.75
19 5 0.21
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (19 bp):
GAGCATACTGGCTCGTCAA
Found at i:59809 original size:20 final size:20
Alignment explanation
Indices: 59781--59820 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
59771 GGGAGAATTG
59781 TATGCATTTTTATGAATTCT
1 TATGCATTTTTATGAATTCT
*
59801 TATGTATTTTTATGAATTCT
1 TATGCATTTTTATGAATTCT
59821 GCTTGGTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.07, G:0.10, T:0.57
Consensus pattern (20 bp):
TATGCATTTTTATGAATTCT
Found at i:59996 original size:21 final size:21
Alignment explanation
Indices: 59945--59998 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
59935 AAACATAGAA
*
59945 GTATCGGTAAAACGTCTGCTT
1 GTATCGGTAGAACGTCTGCTT
* *
59966 GTATTGGTAGAATGTCTGCTT
1 GTATCGGTAGAACGTCTGCTT
59987 GTATCGGTAGAA
1 GTATCGGTAGAA
59999 GTTACAAGGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.24, C:0.13, G:0.28, T:0.35
Consensus pattern (21 bp):
GTATCGGTAGAACGTCTGCTT
Found at i:67230 original size:209 final size:208
Alignment explanation
Indices: 66871--67290 Score: 662
Period size: 209 Copynumber: 2.0 Consensus size: 208
66861 TCGTTAATTG
* *
66871 AGAAACTATGCTGTGCTTTAGTTTGGACTACCCGAAGGTTGAGGCAGTACATGTTATACCATACA
1 AGAAACTATGCTGTGCTCTAGTTTGGACTACCCGAAGGTTAAGGCAGTACATGTTATACCATACA
* *
66936 ACTTGGTTGATTTCAAAATTGGATCCTCTTAAGTTTATGATGGGGTCGACCGTAATAAATGGAAG
66 ACTTGGTTGATTTCAAAATTGGATCCTCTTAAGTTCATGATGGGGTCGACCGCAATAAATGGAAG
* *
67001 AATGACTAGATAACAAATGCTGCTCTCTAAATTTGACATAGTCTATATGACTCAGAAGGCGATAA
131 AATGACTAGATAACAAATGCTGCTATCTAAATTTGACATAGTCTATATGAATCAGAAGGCGATAA
67066 AAAAGAGTACAAT
196 AAAAGAGTACAAT
*
67079 AGAAACTATGTTGTGCTCTAGTTTGGACTACCCGAAGGTTTAAGGCAGTACATGTTATACCATAC
1 AGAAACTATGCTGTGCTCTAGTTTGGACTACCCGAAGG-TTAAGGCAGTACATGTTATACCATAC
** * *
67144 AACTTGGTTGATTTCAAAATTGGATCCTCTTAAGTTCATGATGGGGT-GAATTGCATTGAATGGA
65 AACTTGGTTGATTTCAAAATTGGATCCTCTTAAGTTCATGATGGGGTCG-ACCGCAATAAATGGA
* ** * *
67208 AGAATGGCTAGATGGCAAATGCTGCTATCTGAATTTGACATAGTCTATGTGAATCAGAAGGCGAT
129 AGAATGACTAGATAACAAATGCTGCTATCTAAATTTGACATAGTCTATATGAATCAGAAGGCGAT
*
67273 AAAAGAGAGTACAAT
194 AAAAAAGAGTACAAT
67288 AGA
1 AGA
67291 TGATTTTCTA
Statistics
Matches: 193, Mismatches: 17, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
208 37 0.19
209 156 0.81
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.30
Consensus pattern (208 bp):
AGAAACTATGCTGTGCTCTAGTTTGGACTACCCGAAGGTTAAGGCAGTACATGTTATACCATACA
ACTTGGTTGATTTCAAAATTGGATCCTCTTAAGTTCATGATGGGGTCGACCGCAATAAATGGAAG
AATGACTAGATAACAAATGCTGCTATCTAAATTTGACATAGTCTATATGAATCAGAAGGCGATAA
AAAAGAGTACAAT
Found at i:69579 original size:28 final size:26
Alignment explanation
Indices: 69526--69579 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 26
69516 TTCTTGGACC
* *
69526 AGTGTTTGTAATTTTGGCCATTGTTT
1 AGTGTTTGTAATTTTGACCAATGTTT
*
69552 AGTGTTTGTCATTCTTTGACCAATGTTT
1 AGTGTTTGT-AAT-TTTGACCAATGTTT
69580 GATATTGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 9 0.39
27 2 0.09
28 12 0.52
ACGTcount: A:0.17, C:0.11, G:0.20, T:0.52
Consensus pattern (26 bp):
AGTGTTTGTAATTTTGACCAATGTTT
Found at i:70399 original size:51 final size:50
Alignment explanation
Indices: 70264--70399 Score: 123
Period size: 51 Copynumber: 2.7 Consensus size: 50
70254 TAGCAGACCT
* * * * *
70264 TTATCT-TCTTGAAGTTGCAGTGGAGCAAGTTGAAGCTACAACATCAAATC
1 TTATCTCTC-TGAAGTTGCAGTAGAGCAGGATGAAGATACAAAATCAAATC
* * * ** * *
70314 CTATGTCTTTGAAGTTGCAGTAGA-TTGGATTGAAGATACAAAAGTGAATTC
1 TTATCTCTCTGAAGTTGCAGTAGAGCAGGA-TGAAGATACAAAA-TCAAATC
70365 TTATCTCTCTGAAGTTGCAGTAGAGCAGGATGAAG
1 TTATCTCTCTGAAGTTGCAGTAGAGCAGGATGAAG
70400 CTACTTATAC
Statistics
Matches: 65, Mismatches: 17, Indels: 7
0.73 0.19 0.08
Matches are distributed among these distances:
49 1 0.02
50 29 0.45
51 32 0.49
52 3 0.05
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.31
Consensus pattern (50 bp):
TTATCTCTCTGAAGTTGCAGTAGAGCAGGATGAAGATACAAAATCAAATC
Found at i:70473 original size:51 final size:50
Alignment explanation
Indices: 70411--70569 Score: 143
Period size: 51 Copynumber: 3.2 Consensus size: 50
70401 TACTTATACC
70411 CTTAAAGTTGCAGTGGGTCAGATTAAAGTCATGAAAGCAAATCTTTATCT
1 CTTAAAGTTGCAGTGGGTCAGATTAAAGTCATGAAAGCAAATCTTTATCT
* * *
70461 CTCTAAAGTTGCAGTGGCG-CA-AGTTAAAG-C-TGCCAAACCAAATC-CTATACC
1 CT-TAAAGTTGCAGTGG-GTCAGA-TTAAAGTCATG--AAAGCAAATCTTTAT-CT
* * *
70512 CTTAAAGTTGCA--AGGTCAGATTAAAATCATAAAAGCAAATCTTTATCT
1 CTTAAAGTTGCAGTGGGTCAGATTAAAGTCATGAAAGCAAATCTTTATCT
*
70560 CATTTAAGTT
1 C-TTAAAGTT
70570 ATAGTGGTGC
Statistics
Matches: 87, Mismatches: 10, Indels: 25
0.71 0.08 0.20
Matches are distributed among these distances:
47 1 0.01
48 19 0.22
49 14 0.16
50 18 0.21
51 34 0.39
52 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (50 bp):
CTTAAAGTTGCAGTGGGTCAGATTAAAGTCATGAAAGCAAATCTTTATCT
Found at i:71915 original size:13 final size:12
Alignment explanation
Indices: 71897--71949 Score: 56
Period size: 13 Copynumber: 4.3 Consensus size: 12
71887 TATTTGCATG
71897 ATTTTATTTACTT
1 ATTTTATTTA-TT
71910 ATTTTATTTAATT
1 ATTTTATTT-ATT
*
71923 TTTTTATTTATT
1 ATTTTATTTATT
71935 A--TTATTTATCT
1 ATTTTATTTAT-T
71946 ATTT
1 ATTT
71950 GTGATTCATT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
10 8 0.24
11 2 0.06
12 3 0.09
13 20 0.59
14 1 0.03
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.72
Consensus pattern (12 bp):
ATTTTATTTATT
Found at i:72105 original size:11 final size:10
Alignment explanation
Indices: 72072--72145 Score: 55
Period size: 10 Copynumber: 7.2 Consensus size: 10
72062 TTCATAATTG
72072 TTTATTTTT-
1 TTTATTTTTA
72081 TTTATTTATT-
1 TTTATTT-TTA
72091 TTTATTTGTTA
1 TTTATTT-TTA
72102 TTTATTATTTA
1 TTTATT-TTTA
*
72113 TTTATGTGTTA
1 TTTAT-TTTTA
*
72124 TTT-TATTATA
1 TTTAT-TTTTA
*
72134 TTTAATTTTA
1 TTTATTTTTA
72144 TT
1 TT
72146 GATATCCTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
9 7 0.13
10 24 0.45
11 20 0.38
12 2 0.04
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:79420 original size:14 final size:14
Alignment explanation
Indices: 79401--79444 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
79391 CATTTATTTT
79401 TTTTATTATCTAAA
1 TTTTATTATCTAAA
79415 TTTTATT-T-T---
1 TTTTATTATCTAAA
79424 TTTTATTATCTAAA
1 TTTTATTATCTAAA
79438 TTTTATT
1 TTTTATT
79445 TGTCACTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 10
0.71 0.00 0.29
Matches are distributed among these distances:
9 7 0.28
10 1 0.04
11 1 0.04
12 1 0.04
13 1 0.04
14 14 0.56
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTATTATCTAAA
Found at i:79423 original size:23 final size:23
Alignment explanation
Indices: 79393--79445 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
79383 TGTCGTTGCA
79393 TTTATTTTTTTTATTATCTAAAT
1 TTTATTTTTTTTATTATCTAAAT
79416 TTTATTTTTTTTATTATCTAAAT
1 TTTATTTTTTTTATTATCTAAAT
79439 TTTATTT
1 TTTATTT
79446 GTCACTAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.72
Consensus pattern (23 bp):
TTTATTTTTTTTATTATCTAAAT
Found at i:89004 original size:23 final size:22
Alignment explanation
Indices: 88968--89011 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
88958 TAAATATTTC
*
88968 ATTAAATAATTTGGGTTGAATTA
1 ATTAAATAAATTGGGTT-AATTA
*
88991 ATTAATTAAATTGGGTTAATT
1 ATTAAATAAATTGGGTTAATT
89012 TTATTTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (22 bp):
ATTAAATAAATTGGGTTAATTA
Found at i:92547 original size:53 final size:53
Alignment explanation
Indices: 92467--92711 Score: 357
Period size: 53 Copynumber: 4.6 Consensus size: 53
92457 GTAAATGCAA
*
92467 AAAGGTCCGATGACTCTGTGTCATCGTGAGTTATATGAATCCTATCACGGATT
1 AAAGGTCCGATGACTCTGTGTCATCGTGAGTTATATGAATCCTATTACGGATT
* *
92520 AAAGGTCCGATGACTCTATGTCATCGTGAGTTATATGAATCCTATTATGGATT
1 AAAGGTCCGATGACTCTGTGTCATCGTGAGTTATATGAATCCTATTACGGATT
* *
92573 AAAGGTCCGATGACTCTGTATCATTGTGAGTTATATG-ATCCTATTACGGATT
1 AAAGGTCCGATGACTCTGTGTCATCGTGAGTTATATGAATCCTATTACGGATT
* * * *
92625 AAAGGTCCGATGACTCTGTGTCATCATGAGTTTTATGAACCCTATTACAGATT
1 AAAGGTCCGATGACTCTGTGTCATCGTGAGTTATATGAATCCTATTACGGATT
* * ** *
92678 AAAGATCTGATGACTCCATGTAATCGTGAGTTAT
1 AAAGGTCCGATGACTCTGTGTCATCGTGAGTTAT
92712 CAAATGTGAA
Statistics
Matches: 171, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
52 47 0.27
53 124 0.73
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (53 bp):
AAAGGTCCGATGACTCTGTGTCATCGTGAGTTATATGAATCCTATTACGGATT
Found at i:92655 original size:105 final size:106
Alignment explanation
Indices: 92467--92711 Score: 352
Period size: 105 Copynumber: 2.3 Consensus size: 106
92457 GTAAATGCAA
*
92467 AAAGGTCCGATGACTCTGTGTCATCGTGAGTTATATGAATCCTATCACGGATTAAAGGTCCGATG
1 AAAGGTCCGATGACTCTGTATCATCGTGAGTTATATGAATCCTATCACGGATTAAAGGTCCGATG
* * **
92532 ACTCTATGTCATCGTGAGTTATATGAATCCTATTATGGATT
66 ACTCTATGTCATCATGAGTTATATGAACCCTATTACAGATT
* *
92573 AAAGGTCCGATGACTCTGTATCATTGTGAGTTATATG-ATCCTATTACGGATTAAAGGTCCGATG
1 AAAGGTCCGATGACTCTGTATCATCGTGAGTTATATGAATCCTATCACGGATTAAAGGTCCGATG
* *
92637 ACTCTGTGTCATCATGAGTTTTATGAACCCTATTACAGATT
66 ACTCTATGTCATCATGAGTTATATGAACCCTATTACAGATT
* *
92678 AAAGATCTGATGACTCCATGTA--ATCGTGAGTTAT
1 AAAGGTCCGATGACT-C-TGTATCATCGTGAGTTAT
92712 CAAATGTGAA
Statistics
Matches: 125, Mismatches: 12, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
105 85 0.68
106 36 0.29
107 4 0.03
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (106 bp):
AAAGGTCCGATGACTCTGTATCATCGTGAGTTATATGAATCCTATCACGGATTAAAGGTCCGATG
ACTCTATGTCATCATGAGTTATATGAACCCTATTACAGATT
Done.