Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013643.1 Kokia drynarioides strain JFW-HI SEQ_128671, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 80214
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 362 characters in sequence are not A, C, G, or T
Found at i:3329 original size:15 final size:15
Alignment explanation
Indices: 3301--3338 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 15
3291 CCACATATCA
3301 TATAAAAATAAAAAG
1 TATAAAAATAAAAAG
3316 TATAATAAATAAAAAG
1 TATAA-AAATAAAAAG
*
3332 TTTAAAA
1 TATAAAA
3339 CATATAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.26
Consensus pattern (15 bp):
TATAAAAATAAAAAG
Found at i:3750 original size:15 final size:15
Alignment explanation
Indices: 3730--3785 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
3720 TAGTATTATT
3730 TTGCTGTTATTTTTA
1 TTGCTGTTATTTTTA
*
3745 TTGCTGATTTTATTGTTA
1 TTGCTG---TTATTTTTA
3763 TTTG-TGTTATTTTTA
1 -TTGCTGTTATTTTTA
*
3778 TTGTTGTT
1 TTGCTGTT
3786 TTGCTGTTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 3 0.09
15 18 0.53
18 10 0.29
19 3 0.09
ACGTcount: A:0.12, C:0.04, G:0.16, T:0.68
Consensus pattern (15 bp):
TTGCTGTTATTTTTA
Found at i:4159 original size:20 final size:20
Alignment explanation
Indices: 4121--4159 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4111 ATTTGATATA
* *
4121 TTGTATATTTTTTAAATTTG
1 TTGTATATATTGTAAATTTG
*
4141 TTGTATATATTGTATATTT
1 TTGTATATATTGTAAATTT
4160 TTAAGTTTGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.64
Consensus pattern (20 bp):
TTGTATATATTGTAAATTTG
Found at i:8824 original size:35 final size:35
Alignment explanation
Indices: 8778--8858 Score: 162
Period size: 35 Copynumber: 2.3 Consensus size: 35
8768 TTTGGACTAA
8778 TGAGAAGACTTGGAATTGGTTAGCCATGGAATTAT
1 TGAGAAGACTTGGAATTGGTTAGCCATGGAATTAT
8813 TGAGAAGACTTGGAATTGGTTAGCCATGGAATTAT
1 TGAGAAGACTTGGAATTGGTTAGCCATGGAATTAT
8848 TGAGAAGACTT
1 TGAGAAGACTT
8859 TGACTCTGCT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.31
Consensus pattern (35 bp):
TGAGAAGACTTGGAATTGGTTAGCCATGGAATTAT
Found at i:9484 original size:18 final size:18
Alignment explanation
Indices: 9440--9489 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
9430 TTCTAAAAAG
*
9440 ATAATATTTATTTTTCTGT
1 ATAATA-TTATTTTCCTGT
9459 ATAA-ATTATTATTCCTGT
1 ATAATATTATT-TTCCTGT
*
9477 -TAATATTAATTTC
1 ATAATATTATTTTC
9490 GCAACTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
17 11 0.41
18 12 0.44
19 4 0.15
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (18 bp):
ATAATATTATTTTCCTGT
Found at i:16413 original size:13 final size:15
Alignment explanation
Indices: 16383--16419 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
16373 ACTCCTTCCT
*
16383 AAAGAAGAAAGCAAA
1 AAAGAAAAAAGCAAA
16398 AAA-AAAAAAG-AAA
1 AAAGAAAAAAGCAAA
16411 AAAGAAAAA
1 AAAGAAAAA
16420 CTAATGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 6 0.30
14 11 0.55
15 3 0.15
ACGTcount: A:0.84, C:0.03, G:0.14, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAAGCAAA
Found at i:19982 original size:28 final size:28
Alignment explanation
Indices: 19929--19982 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
19919 TATTTTTATA
***
19929 ATTTTTAAAAAATTAAATATTTTTTTTC
1 ATTTTTAAAAAATTAAATACAGTTTTTC
19957 ATTTTT-AAAAATTAAAATACAGTTTT
1 ATTTTTAAAAAATT-AAATACAGTTTT
19983 ACAATATACT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.52
Consensus pattern (28 bp):
ATTTTTAAAAAATTAAATACAGTTTTTC
Found at i:28589 original size:37 final size:37
Alignment explanation
Indices: 28548--28665 Score: 94
Period size: 38 Copynumber: 3.1 Consensus size: 37
28538 ATTAATATGG
28548 TAGATCGGTGTTTATTGATGAGTAGAAAAATATACAT
1 TAGATCGGTGTTTATTGATGAGTAGAAAAATATACAT
** ** * * * ** * **
28585 TAGATTCAAAT-TCAATTGACGATTCGATGATTAATACGG
1 TAGA-TC-GGTGTTTATTGATGAGTAGAAAAAT-ATACAT
28624 TAGATCGGTGTTTATTGATGAGTAGAAAAATATACAT
1 TAGATCGGTGTTTATTGATGAGTAGAAAAATATACAT
28661 TAGAT
1 TAGAT
28666 TCAAATATGG
Statistics
Matches: 53, Mismatches: 24, Indels: 8
0.62 0.28 0.09
Matches are distributed among these distances:
37 14 0.26
38 30 0.57
39 9 0.17
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.35
Consensus pattern (37 bp):
TAGATCGGTGTTTATTGATGAGTAGAAAAATATACAT
Found at i:28641 original size:38 final size:38
Alignment explanation
Indices: 28523--28641 Score: 89
Period size: 38 Copynumber: 3.1 Consensus size: 38
28513 ACAATATTCA
*
28523 ATTGACGATTCGATGATTAATATGGTAGATCGGTGTTT
1 ATTGACGATTCGATGATTAATACGGTAGATCGGTGTTT
* * * ** * ** ** **
28561 ATTGATGAGTAGAAAAAT-ATACATTAGATTCAAAT-TCA
1 ATTGACGATTCGATGATTAATACGGTAGA-TC-GGTGTTT
28599 ATTGACGATTCGATGATTAATACGGTAGATCGGTGTTT
1 ATTGACGATTCGATGATTAATACGGTAGATCGGTGTTT
28637 ATTGA
1 ATTGA
28642 TGAGTAGAAA
Statistics
Matches: 52, Mismatches: 25, Indels: 8
0.61 0.29 0.09
Matches are distributed among these distances:
37 8 0.15
38 35 0.67
39 9 0.17
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (38 bp):
ATTGACGATTCGATGATTAATACGGTAGATCGGTGTTT
Found at i:28644 original size:76 final size:76
Alignment explanation
Indices: 28518--28671 Score: 299
Period size: 76 Copynumber: 2.0 Consensus size: 76
28508 GATTAACAAT
*
28518 ATTCAATTGACGATTCGATGATTAATATGGTAGATCGGTGTTTATTGATGAGTAGAAAAATATAC
1 ATTCAATTGACGATTCGATGATTAATACGGTAGATCGGTGTTTATTGATGAGTAGAAAAATATAC
28583 ATTAGATTCAA
66 ATTAGATTCAA
28594 ATTCAATTGACGATTCGATGATTAATACGGTAGATCGGTGTTTATTGATGAGTAGAAAAATATAC
1 ATTCAATTGACGATTCGATGATTAATACGGTAGATCGGTGTTTATTGATGAGTAGAAAAATATAC
28659 ATTAGATTCAA
66 ATTAGATTCAA
28670 AT
1 AT
28672 ATGGATCAAA
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 77 1.00
ACGTcount: A:0.37, C:0.08, G:0.19, T:0.35
Consensus pattern (76 bp):
ATTCAATTGACGATTCGATGATTAATACGGTAGATCGGTGTTTATTGATGAGTAGAAAAATATAC
ATTAGATTCAA
Found at i:37030 original size:35 final size:34
Alignment explanation
Indices: 36988--37065 Score: 120
Period size: 35 Copynumber: 2.2 Consensus size: 34
36978 GTACATGCCT
36988 TTTCCCTTCCTCTTTTCCTTTATTTCTTTAAGCC
1 TTTCCCTTCCTCTTTTCCTTTATTTCTTTAAGCC
* *
37022 TTATCCCTTCTTCTTTTCTTTTATTTCTTTAAGCC
1 TT-TCCCTTCCTCTTTTCCTTTATTTCTTTAAGCC
37057 TCTTCCCTT
1 T-TTCCCTT
37066 TTTATTTAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
34 2 0.05
35 37 0.93
36 1 0.03
ACGTcount: A:0.09, C:0.31, G:0.03, T:0.58
Consensus pattern (34 bp):
TTTCCCTTCCTCTTTTCCTTTATTTCTTTAAGCC
Found at i:47973 original size:24 final size:25
Alignment explanation
Indices: 47928--47984 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
47918 AAATTATTTA
*
47928 AAAAAATTAAATAAAAATAAATAAAC
1 AAAAAA-TAAATAAAAAGAAATAAAC
* **
47954 AAAAAATAAA-AGAAAGAAATATGC
1 AAAAAATAAATAAAAAGAAATAAAC
47978 AAAAAAT
1 AAAAAAT
47985 TCGAGTAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 17 0.63
25 4 0.15
26 6 0.22
ACGTcount: A:0.75, C:0.04, G:0.05, T:0.16
Consensus pattern (25 bp):
AAAAAATAAATAAAAAGAAATAAAC
Found at i:50168 original size:21 final size:21
Alignment explanation
Indices: 50142--50181 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
50132 AGTTACTAGC
50142 GAGTTCAG-TTCAATTAAATTT
1 GAGTTC-GTTTCAATTAAATTT
*
50163 GAGTTCGTTTGAATTAAAT
1 GAGTTCGTTTCAATTAAAT
50182 GGTTTACGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (21 bp):
GAGTTCGTTTCAATTAAATTT
Found at i:52175 original size:24 final size:26
Alignment explanation
Indices: 52131--52187 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 26
52121 TCTATTTTCG
52131 TAATTAATAAGTTTTTCATATT-TTT
1 TAATTAATAAGTTTTTCATATTATTT
* *
52156 TAATTAATTA-TTTTTTATATTATTT
1 TAATTAATAAGTTTTTCATATTATTT
*
52181 AAATTAA
1 TAATTAA
52188 AAAAGACACC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 10 0.36
25 18 0.64
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (26 bp):
TAATTAATAAGTTTTTCATATTATTT
Found at i:55414 original size:22 final size:21
Alignment explanation
Indices: 55372--55418 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
55362 AAGTCAATGA
55372 AAAAAATTAGAGTCTAATTATT
1 AAAAAATTAGAGTCTAATTA-T
55394 AAAAAATTA-AGAT-TAATTTAT
1 AAAAAATTAGAG-TCTAA-TTAT
55415 AAAA
1 AAAA
55419 TGTGAAAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.34
Consensus pattern (21 bp):
AAAAAATTAGAGTCTAATTAT
Found at i:60105 original size:2 final size:2
Alignment explanation
Indices: 60098--60122 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
60088 AAAATGAAGC
60098 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
60123 ATCTTTAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:66407 original size:6 final size:6
Alignment explanation
Indices: 66396--66427 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
66386 ACAAAATACA
66396 CACCAG CACCAG CACCAG CACCAG CACCAG CA
1 CACCAG CACCAG CACCAG CACCAG CACCAG CA
66428 ATAGCTTTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.34, C:0.50, G:0.16, T:0.00
Consensus pattern (6 bp):
CACCAG
Found at i:71318 original size:124 final size:123
Alignment explanation
Indices: 71152--71871 Score: 900
Period size: 124 Copynumber: 5.9 Consensus size: 123
71142 TACAACTCTA
* *
71152 AACATGAACTATAAAATAGACATGAA-AATAAAAAAATTTGAATGAGTTAGTTGTATTAATCGGA
1 AACATGAACTATAAAATAAACATGAACAATAAAAAAA--TGAATGAGTTAATTGTATTAATCGGA
**
71216 TCCGATATGTAATTACTTAAAAAAAAAAATACCTTTTAAAAAAAATT-ACTTGAAATACTG
64 TCCGATATGTAATTACTTAAAAAAAAAAATACCTTTT-AAAAAAATTGACTTGAAACCCTG
* * * *
71276 AACATGAATTATAAAATAGATATGAATAATAAAGAAAATGAATGAGTTAATTGTATTAATCGGAT
1 AACATGAACTATAAAATAAACATGAACAATAAA-AAAATGAATGAGTTAATTGTATTAATCGGAT
* * * * *
71341 CCGATATGCAATTACTTAAAAAAGAAAATGATCTTTTTAAAAAATTGACTTGAAACCCTA
65 CCGATATGTAATTACTTAAAAAAAAAAAT-ACCTTTTAAAAAAATTGACTTGAAACCCTG
* * * * *
71401 AACATGAACTATAAAATAGACACGAAGAATAAAAAAACGAATGACTTAATTGTATTAATCGGATC
1 AACATGAACTATAAAATAAACATGAACAATAAAAAAATGAATGAGTTAATTGTATTAATCGGATC
* *
71466 CGATATGTTATTACTTAAAAAAAAAAA-AGCC-TTTAAAAAAA-TAACTTGAAACCCTG
66 CGATATGTAATTACTTAAAAAAAAAAATA-CCTTTTAAAAAAATTGACTTGAAACCCTG
* * * * * *
71522 AACATGAGCTATGAAATAAATATGAACAGTAAAAAAATGAACGAGTTAATTATATTAATCGGATC
1 AACATGAACTATAAAATAAACATGAACAATAAAAAAATGAATGAGTTAATTGTATTAATCGGATC
* ** ** *
71587 CGATATGTAATTACTTAAAAAAGAAAATGTCTTTTTTAAAAATTGACTCGAAACCCTG
66 CGATATGTAATTACTTAAAAAAAAAAATACCTTTTAAAAAAATTGACTTGAAACCCTG
* * *
71645 AA-ATGAACTATAAAATAAACATAAAGAATAAAAAAATAAATGAGTTAATTGTATTAATCGGATC
1 AACATGAACTATAAAATAAACATGAACAATAAAAAAATGAATGAGTTAATTGTATTAATCGGATC
* * * *
71709 CGATATTTAATTACTTAAAAAAGAAAATACCTTTTAAAAAAATTAACTTGAAACTCTG
66 CGATATGTAATTACTTAAAAAAAAAAATACCTTTTAAAAAAATTGACTTGAAACCCTG
* * * * * *
71767 AACATGAACTATAATATAAATATAAACAGTAAAAAAATGAATGAGTTAATTTTATTAATCAGATC
1 AACATGAACTATAAAATAAACATGAACAATAAAAAAATGAATGAGTTAATTGTATTAATCGGATC
*
71832 CGATATATAATTACTT---AAAAAAAATACCTTCTTAAAAAAA
66 CGATATGTAATTACTTAAAAAAAAAAATACCTT-TTAAAAAAA
71872 ATTTGACTGT
Statistics
Matches: 518, Mismatches: 68, Indels: 23
0.85 0.11 0.04
Matches are distributed among these distances:
120 13 0.03
121 102 0.20
122 123 0.24
123 86 0.17
124 139 0.27
125 51 0.10
126 4 0.01
ACGTcount: A:0.50, C:0.10, G:0.11, T:0.29
Consensus pattern (123 bp):
AACATGAACTATAAAATAAACATGAACAATAAAAAAATGAATGAGTTAATTGTATTAATCGGATC
CGATATGTAATTACTTAAAAAAAAAAATACCTTTTAAAAAAATTGACTTGAAACCCTG
Found at i:71590 original size:245 final size:243
Alignment explanation
Indices: 71149--71853 Score: 1013
Period size: 245 Copynumber: 2.9 Consensus size: 243
71139 ATTTACAACT
*
71149 CTAAACATGAACTATAAAATAGACATGAA-AATAAAAAAATTTGAATGAGTTAGTTGTATTAATC
1 CTAAACATGAACTATAAAATAGACATGAAGAATAAAAAAA--TGAATGAGTTAATTGTATTAATC
* * *
71213 GGATCCGATATGTAATTACTTAAAAAAAAAAATACCTTTTAAAAAAAATTACTTGAAATACTGAA
64 GGATCCGATATGTTATTACTTAAAAAAAAAAA-ACCTTTT-AAAAAAATAACTTGAAACACTGAA
* * * * *
71278 CATGAATTATAAAATAGATATGAATAATAAAGAAAATGAATGAGTTAATTGTATTAATCGGATCC
127 CATGAACTAT-AAATAAATATGAACAGTAAA-AAAATGAATGAGTTAATTATATTAATCGGATCC
* *
71343 GATATGCAATTACTTAAAAAAGAAAATGATCTTTTTAAAAAATTGACTTGAAACC
190 GATATGTAATTACTTAAAAAAGAAAATG-TCTTTTTAAAAAATTGACTCGAAACC
* * *
71398 CTAAACATGAACTATAAAATAGACACGAAGAATAAAAAAACGAATGACTTAATTGTATTAATCGG
1 CTAAACATGAACTATAAAATAGACATGAAGAATAAAAAAATGAATGAGTTAATTGTATTAATCGG
*
71463 ATCCGATATGTTATTACTTAAAAAAAAAAAAGCC-TTTAAAAAAATAACTTGAAACCCTGAACAT
66 ATCCGATATGTTATTACTTAAAAAAAAAAAA-CCTTTTAAAAAAATAACTTGAAACACTGAACAT
* *
71527 GAGCTATGAAATAAATATGAACAGTAAAAAAATGAACGAGTTAATTATATTAATCGGATCCGATA
130 GAACTAT-AAATAAATATGAACAGTAAAAAAATGAATGAGTTAATTATATTAATCGGATCCGATA
*
71592 TGTAATTACTTAAAAAAGAAAATGTCTTTTTTAAAAATTGACTCGAAACC
194 TGTAATTACTTAAAAAAGAAAATGTCTTTTTAAAAAATTGACTCGAAACC
* * * *
71642 CTGAA-ATGAACTATAAAATAAACATAAAGAATAAAAAAATAAATGAGTTAATTGTATTAATCGG
1 CTAAACATGAACTATAAAATAGACATGAAGAATAAAAAAATGAATGAGTTAATTGTATTAATCGG
* *
71706 ATCCGATAT-TTAATTACTTAAAAAAGAAAATACCTTTTAAAAAAATTAACTTGAAACTCTGAAC
66 ATCCGATATGTT-ATTACTTAAAAAA-AAAAAACCTTTTAAAAAAA-TAACTTGAAACACTGAAC
* * *
71770 ATGAACTATAATATAAATATAAACAGTAAAAAAATGAATGAGTTAATTTTATTAATCAGATCCGA
128 ATGAACTATAA-ATAAATATGAACAGTAAAAAAATGAATGAGTTAATTATATTAATCGGATCCGA
*
71835 TATATAATTACTTAAAAAA
192 TATGTAATTACTTAAAAAA
71854 AATACCTTCT
Statistics
Matches: 415, Mismatches: 34, Indels: 18
0.89 0.07 0.04
Matches are distributed among these distances:
242 2 0.00
243 77 0.19
244 45 0.11
245 150 0.36
246 46 0.11
247 4 0.01
248 53 0.13
249 28 0.07
250 10 0.02
ACGTcount: A:0.50, C:0.10, G:0.11, T:0.29
Consensus pattern (243 bp):
CTAAACATGAACTATAAAATAGACATGAAGAATAAAAAAATGAATGAGTTAATTGTATTAATCGG
ATCCGATATGTTATTACTTAAAAAAAAAAAACCTTTTAAAAAAATAACTTGAAACACTGAACATG
AACTATAAATAAATATGAACAGTAAAAAAATGAATGAGTTAATTATATTAATCGGATCCGATATG
TAATTACTTAAAAAAGAAAATGTCTTTTTAAAAAATTGACTCGAAACC
Found at i:76791 original size:19 final size:20
Alignment explanation
Indices: 76767--76810 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
76757 AGGAACTTGC
76767 CTTGTGGA-AAAGCTAACCA
1 CTTGTGGAGAAAGCTAACCA
**
76786 CTTGT-GAGATCGCTAACCA
1 CTTGTGGAGAAAGCTAACCA
76805 CTTGTG
1 CTTGTG
76811 AGATCTATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 2 0.10
19 19 0.90
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (20 bp):
CTTGTGGAGAAAGCTAACCA
Found at i:76811 original size:19 final size:19
Alignment explanation
Indices: 76778--76815 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
76768 TTGTGGAAAA
76778 GCTAACCACTTGTGAGATC
1 GCTAACCACTTGTGAGATC
76797 GCTAACCACTTGTGAGATC
1 GCTAACCACTTGTGAGATC
76816 TATTCCTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (19 bp):
GCTAACCACTTGTGAGATC
Found at i:78012 original size:19 final size:19
Alignment explanation
Indices: 77980--78017 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
77970 ATTTTTATTT
* *
77980 TAAATTTAATTATAAAATA
1 TAAATATAAATATAAAATA
77999 TAAATATAAATATAAAATA
1 TAAATATAAATATAAAATA
78018 ATATAATTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
TAAATATAAATATAAAATA
Done.