Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013647.1 Kokia drynarioides strain JFW-HI SEQ_128675, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6340
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Found at i:378 original size:216 final size:215
Alignment explanation
Indices: 1--6301 Score: 5702
Period size: 216 Copynumber: 29.2 Consensus size: 215
* *
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACTAGTTCGT
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGT
* * *
66 AAGTTCGTCCGAGAACCAACAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAA
66 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * *
131 AATTTGTTTACAAAATCACAAACTATTTAGACCAAAAGATGCGATTTTCGGAGCATGAAATGTTC
131 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-GAGCATGGAATGTTC
196 -AGAAAATGGCTCAAAGGAATG
195 GA-AAAATGGCTCAAAGGAATG
* * * *
217 GATAGTCTTGAATACTTTGAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTCGACTAGTTTGT
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGT
* ** * * * * *
282 AAGTTCGTCCTAGAACCACTAGAGAAACAATTCACATGTAAATAGGTTTTTAATTCGAAGACTAA
66 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * * * *
347 AAGTTATTTACATAATGACAAAGTTTTTAGA-CAGAATGATACGA-TTCCGGAGCGTGGAAAGTT
131 AAGTTGTTTACAAAATGACAAACTATTTAGACCA-AATGATGCGATTTTC-GAGCATGGAATGTT
*
410 CGAAAAATTGG-TCGAAGGAATG
194 CGAAAAA-TGGCTCAAAGGAATG
* * * * ** * * ** * * *
432 GATCGTCTTGAGTACTCTCAGGAACTTAAGTTACAAAAGAGCTATTAAATGTTCCG-CAAGTACG
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT-TGACAAGTTCG
* * *
496 GAAGTTCGTCCAAAAACCATGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
65 TAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * *
561 AAAATTGTTTAGAAAATAATAACCTATTTAGACCAAATGATGTC-ATTTCTCGAGCATGGAATGC
130 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTT-TCGAGCATGGAATG-
* *
625 TT-GAAAAATTGCACAAAGGAATG
192 TTCGAAAAATGGCTCAAAGGAATG
* * * * * * * *
648 GGTCA-CCTTCAGTAGTTTAAGGAACCGAAGTTATAAAATAACT-GATAAAAAGTTTGACAATTT
1 GAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCG-T-AAAAGTTTGACAAGTT
*** * * *
711 TAAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTGTCATGTAAAT-A-TTTTTAATT-AGAAGG
63 CGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA-AAGA
* * * * * * * *
773 CGAAAAGTTGATTACAAAAATAAAAAACTATTTAGACCAAACGATGCGATTTCCCAAGCATAGAA
127 CCAAAAGTTGTTTAC-AAAATGACAAACTATTTAGACCAAATGATGCGATTT-TCGAGCATGGAA
* * *
838 TGTTCGGAAAATTGCTCGAAGGAATG
190 TGTTCGAAAAATGGCTCAAAGGAATG
* * ** * * * * *
864 GATCGTCTTAAATACTTTAAGGAACTGAATTTATAAAAGAACTCATAAAAGCTAGACAAGTTCGA
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGT
* ** * * * *
929 AAG-TCAG-CCAGGAATAAAGAGAGAAACAGTTCTTACGTAAATAAATTTTTAATTCGAAGACCA
66 AAGTTC-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* *
992 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTCGAGCATGGAATGCT
130 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-TCGAGCATGGAATGTT
* * *
1057 CGAAAAATGTCTCAAATGATTG
194 CGAAAAATGGCTCAAAGGAATG
* * * *
1079 GATAGTCTTGAGTACTTTTAAGGAACCAAAGTTGTAAAAGAACTCATAAAAGTTTGACTAGTTCG
1 GATAGTCTTGAATAC-TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
** *
1144 TAAGTTCGTCTGAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCA
65 TAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * *** * *
1209 AAATTTGTTTACAAAATTAAAAAAC-ATTTAGAATGAATGATGCGATTTCCCGAGCATGGAATGC
130 AAAGTTGTTTACAAAA-TGACAAACTATTTAGACCAAATGATGCGATTT-TCGAGCATGGAATGT
*** *
1273 TCGAAAAATTATTCGAAGGAATG
193 TCGAAAAATGGCTCAAAGGAATG
* * * * * * *
1296 GGTCA-TCTTTAATACTCTCAGAAACCGAAGTTATAAAAGAACTGGTAAATA-TTTGACAAGTTC
1 GAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA-AGTTTGACAAGTTC
* *
1359 -TGAAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTCATGTAAATAAGTTTTTAATTCAAAGAC
64 GT-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
*
1423 CAAAAGGTT-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAT
128 CAAAA-GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-TCGAGCATGGAAT
* * * * *
1487 GTTTGAAAATTTGCACAAAGGAACG
191 GTTCGAAAAATGGCTCAAAGGAATG
* * * * ** *
1512 GATCGTCTTTAATACTGTCAA-GAACCAAAGTTATAATAAAAGAACTTGTAAATTTTTGAAAAGT
1 GATAGTCTTGAATACT-TTAAGGAACCAAAG-T-T-ATAAAAGAACTCGTAAAAGTTTGACAAGT
* * ** * * * * *
1576 TTGAAAGTTAATCCAAGAACCAAGAGAGAAA-ATATTCTCATGCAAATAAATTTTAAATTCAAAC
62 TCGTAAGTTCGTCCAAGAACCAAGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * * *
1640 ACCAAAAGTTGTTTACCATATGACAAACTATTTTGACCAAATGATGCAATTTTTCGAGAATGGAA
126 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTTCGAGCATGGAA
* **
1705 TGTTCAAAAAATTGG-TTGAAGGAATG
190 TGTTCGAAAAA-TGGCTCAAAGGAATG
* ** * * * ** *
1731 CATCTTCTTAAATACTATT-AGGAACCAAATTTATAAAAGAACTTGTAAATTTTTGAAAAGTTCG
1 GATAGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * * *
1795 AAAGTTCATCCAAGAACTAGGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
65 TAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * *
1860 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCTATTTCTCGAGCATGGAATGCT
130 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-TCGAGCATGGAATGTT
*
1925 CGAAAAATGGCTCAAATGAATG
194 CGAAAAATGGCTCAAAGGAATG
* * *
1947 GATAGTCTTGAATACATTAAGGAACCAAAGCTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGT
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGT
* * * *
2012 AAGTTTGTCCGAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAAACCAA
66 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * * *
2077 AATTTGTGTACAAAATCACAAACTATTTAGACCAAAAGATACGATTTCTGGATCATGGAATGTTC
131 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-TCGAGCATGGAATGTTC
*
2142 -AGAAAATGGCACAAAGGAATG
195 GA-AAAATGGCTCAAAGGAATG
*
2163 GATAGTCTTGAATACTTTGAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTCT-ACTAA-TTC
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT-TGAC-AAGTTC
* * *
2226 GTAAGTTCGTCCTAGAACCACA-AGAGAAACAATTCTCACGTAAATAGGTTTTTAATTCGAAGAC
64 GTAAGTTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * * * * * ** *
2290 TAAAAGTTGTTTACATAATGACAAAGTTTTTAGACCGATTGATACGATTCCCGAGCATGGAAAGT
128 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCGAGCATGGAATGT
*
2355 TCGAAAAATTGG-TCGAAGGAATG
193 TCGAAAAA-TGGCTCAAAGGAATG
* * * * ** * ** ** * * *
2378 GATCGTCTTGAGTACTCTCAGGAACTTAAGTTACAAAAGAGTTATTAAATGTTCCG-CAAGTACG
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT-TGACAAGTTCG
* * * * *
2442 GAAGTTTGTTC-AGAAACCATGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACC
65 TAAGTTCGTCCAAG-AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * **
2506 AAAAATTGTTTAGAAAATGATAATCTATTTAGAAAAAATGATGTC-ATTTCTCGAGCATGGAATG
129 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTT-TCGAGCATGGAATG
* * *
2570 CTT-GAAAAATTGCACAAGGGAATG
192 -TTCGAAAAATGGCTCAAAGGAATG
* * * * * * * * *
2594 GGTCA-CCTTTAGTAGTTTAAGGAACCGAAGTGATAAAAGAACTCGTAAAAGTTCGACTAGTTCG
1 GAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * * * **
2658 TAAGTTCGTCCTAGAACCATA-AGAGAAACAATTCTCATGTAAATAGGTTTTTAATTCGAAGAAT
65 TAAGTTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * * * ** * *
2722 AAAAGTTATTTACATAATGACAAAGTTTTTAGACCGAATGATACGATTCCCGAGCTTGGAAAGTT
129 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCGAGCATGGAATGTT
2787 CGAAAAATTGG-TCAAAGGAATG
194 CGAAAAA-TGGCTCAAAGGAATG
* * * * * ** * * ** * * *
2809 GATCGTTTTGAGTACTCTCAGGAACTTAAGTTACAAAAGAGCTATTAAATGTTCCG-CAAGTACG
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT-TGACAAGTTCG
* * *
2873 GAAGTTCGTCCAAAAACCATGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
65 TAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * *
2938 AAAATTGTTTAGAAAATGATAACCTATTTAGACCAAATGATGTC-ATTTCTCGAGCATGGAATGC
130 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTT-TCGAGCATGGAATG-
* *
3002 TT-GAAAAATTGCACAAAGGAATG
192 TTCGAAAAATGGCTCAAAGGAATG
* * * * * * *
3025 GGTCA-CCTTTAGTAATTTAAGGAACCGAAGTTA-AAAAGGAACT-GATAAAAAGTTTTACAAGT
1 GAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA-GAACTCG-T-AAAAGTTTGACAAGT
* * * *
3087 T--TAGATGTTCGTCCAAGAACCAAGAGAGAAATAATTATCATGTAAAT-A-TTTTTAATTCGAA
62 TCGTA-A-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * * * * * * *
3148 GGCAAAAAGTTGATTACAAAATGAAAAACTATTTAGACCAAACGATGCGATTTTCCAAGCGTAGA
125 GACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTT-CGAGCATGGA
* *
3213 ATGTTCGAAAAATTGCTCGAAGGAATG
189 ATGTTCGAAAAATGGCTCAAAGGAATG
* ** * * * * *
3240 GATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGCTAGACAAGTACGA
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGT
** * * * *
3305 AAGTTCAG-CCAAGAAGAAAGAGAGAAACAGTTCTGATGTAAATAAGTTTTTAATTCAAAGAGCA
66 AAGTTC-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * *
3369 AAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATAATGCGATTTTTCGAGCATTGAATGTT
130 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTTCGAGCATGGAATGTT
* *
3434 CAAAAAACTGG-TCGAA-GAATAG
194 CGAAAAA-TGGCTCAAAGGAAT-G
* * * * * * *
3456 GATCGGCTTGAACAATTTAAGGAACCGAGGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGT
* * * * * *
3521 AAGTTCATCAAAAAACCAAGAGAGAAACTATTCTCACATAAATAAGTTTTCAATTCAAAGACCAA
66 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
*
3586 AAGGTT-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
131 AA-GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-TCGAGCATGGAATGTT
* * * *
3650 TG-AAAATTGCACATAGGAATG
194 CGAAAAATGGCTCAAAGGAATG
* * * * * ** *
3671 GATCGTCTTTAATACTGTCAA-GAACTAAAGTTAAAATAAAAGAACTTGTAAATTTTTGAAAAGT
1 GATAGTCTTGAATACT-TTAAGGAACCAAAGTT---ATAAAAGAACTCGTAAAAGTTTGACAAGT
* * ** * * * *
3735 TTGAAAGTTAATCCAAGAACCATGAGAGAAA-ATATTCTCATGCAAATTAA-TTTTAAATTCAAA
62 TCGTAAGTTCGTCCAAGAACCAAGAGAGAAACA-ATTCTCACGTAAA-TAAGTTTTTAATTCAAA
* * * * * *
3798 CACCAAAAGTTGTTTACCATATGACAAACTATTTTGACCAAATGATGCAATTTTTCGAGAATGGA
125 GACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTTCGAGCATGGA
**
3863 ATGTTCGAAAAATTGG-TTGAAGGAATG
189 ATGTTCGAAAAA-TGGCTCAAAGGAATG
* ** * * ** * *
3890 CATCTTCTTAAATACTATT-AGGAACCAAAGTTATAAAAGAACTTGTAAATTTTTGAAAAGTTTA
1 GATAGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTC
* **** * * *
3954 G-AAGTTCATCCAAGAATTGGGAGAGAAACAATTATCAC-TTAATTAGTTTTTAATTCAAAGACC
64 GTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * *
4017 GAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGC
129 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-TCGAGCATGGAATGT
* *
4082 TCGGAAAATGGCTCAAATGAATG
193 TCGAAAAATGGCTCAAAGGAATG
* * *
4105 GATAGTCTTGAACACTTTAAGGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACTAGTTCGT
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGT
* * * * **
4170 AAGTTTGTCCGAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTAAAAGAGAAA
66 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * *
4235 AATTTGTTTACAAAATCACAAACTATTTAGACCAAAAGACGCGATTTTCGGAGCATGGAAGGTTC
131 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-GAGCATGGAATGTTC
4300 -ACAAAATGGCTCAAAGGAATG
195 GA-AAAATGGCTCAAAGGAATG
* * *
4321 GATAGTCTTGAACACTTTAAGGAACCAAAGTT-TAAAAAGAACTCGTAAAAGTTCGACTAGTTCG
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * * * * *
4385 TGAGTTCATCCTAGAACCACA-AGAGAAACAATTCTCACGTAAATAGGTTTTTAATTCGAAGACT
65 TAAGTTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * ** * * * * * *
4449 AAAAGATGTTTACATAATGACAATGTTTTTAGACCGAATGATACGA-TTCCTGAGCTTGGAAAGT
129 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-GAGCATGGAATGT
* *
4513 TCGAAAAATTGG-TCGACGGAATG
193 TCGAAAAA-TGGCTCAAAGGAATG
* * * * * ** * * ** * * *
4536 GATCGTTTTGAGTACTCTCAGGAACTTAAGTTACAAAAGAGCTATTAAATGTTCCG-CAAGTACG
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT-TGACAAGTTCG
* * * *
4600 GAAATTCGT-CAAAAACCATGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
65 TAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * *
4664 AAAATTGTTTAGAAAATGATAACCTATTTAGACCAAATGATGTC-ATTTCTCGAGCATGGAATGC
130 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTT-TCGAGCATGGAATG-
* *
4728 TT-GAAAAATTGCACAAAGGAATG
192 TTCGAAAAATGGCTCAAAGGAATG
* * * * * * *
4751 GGTCA-CCTTTAGTAGTTTAAGGAACCAAAGTTATAAAGGAACT-GATAAAAAGTTTTACAAGTT
1 GAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCG-T-AAAAGTTTGACAAG-T
* * * * * * *
4814 TAG-AAGTTCATCCAAGAACCAAGAGAGAAACAATTGTCATGTAAAT-A-TTTTAAATTAAAAGG
62 TCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * * * * * *
4876 CGAAAAGTTGATTACAAAATGAAAAACTATTTAGACCAAACGATGCGATTTCCCAAGCGTAGAAT
127 CCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-TCGAGCATGGAAT
* *
4941 GTTCGAAAAATTGCTCGAAGGAATG
191 GTTCGAAAAATGGCTCAAAGGAATG
* ** * * * *
4966 GATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGCTAGACAAGTTCGA
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGT
** * * * * *
5031 AAGTTCAG-CCAAGAAGAAAGAGAGAAACAGTTCTGATGTAAATAAGTTTTTTATTCAAAGAGCA
66 AAGTTC-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
** * *
5095 AAAGTTGTTTAGGAAATGACAAACTATTTAGACCAAATAATGCGATTTTCCGAGCATTGAATGTT
130 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTT-CGAGCATGGAATGTT
*
5160 CGAAAAACTGG-TCGAA-GAATAG
194 CGAAAAA-TGGCTCAAAGGAAT-G
* * * * * * *
5182 GATTGACTTGAATAATTTAAGGAACCGAGGTTATACAAGAACTCGTAAAAGTTTGACAAGTTCGG
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGT
* * * *
5247 AAGTTCATCCAAAAACCAAGAGATAAACAATTCTCACGTAAATAAGTTTTCAATTCAAAGACCAA
66 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-A
* * * * *
5312 AAAGTT-TTTAAAAAATGAAAAACTATTTAGACCAAATGATACGATTTCCCGAGCTTGGAATGTT
130 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-TCGAGCATGGAATGTT
* * * *
5376 TGAAAAATTGCACATAGGAATG
194 CGAAAAATGGCTCAAAGGAATG
* * * * * **
5398 GATCGTCTTTAATACTGTCAA-GAATCAAAGTTATAATAAAAGAACTTGTAAATTTTTGA-AAGT
1 GATAGTCTTGAATACT-TTAAGGAACCAAAG-T-T-ATAAAAGAACTCGTAAAAGTTTGACAAGT
* * ** * * * * *
5461 TTGAAAGTTAATCCAAGAACCAAGAGAGAAA-ATATTCTCATGCAAATAAATTTTAAATTCAAAC
62 TCGTAAGTTCGTCCAAGAACCAAGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * * * *
5525 ACCAAAAGTTGTTTACCATATGACAAACTATTTTGACTAAATGATGCAATTTTTCGAGAATGGAA
126 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTTCGAGCATGGAA
**
5590 TGTTCGAAAAATTGG-TTGAAGGAATG
190 TGTTCGAAAAA-TGGCTCAAAGGAATG
* * * * * * ** *
5616 CACT--TATTAAATACTATT-AGGAACCAAAGTTATTAAAGAAGTTGTAAATTTTTGAAAAGTTC
1 GA-TAGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
* **** *
5678 AG-AAGTTCATCCAAGAATTGGGAGAGAAACTATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
64 -GTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* *
5742 CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATACGATTTCTCGAGCATGGAATG
128 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-TCGAGCATGGAATG
* *
5807 CTCGAAAAATGGCTCAAATGAATG
192 TTCGAAAAATGGCTCAAAGGAATG
* *
5831 GATAGTCTTGAATACTTTAAGGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACTAGTTCGT
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGT
* * *
5896 AAGTTCGTCCGAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTTAAAGACCAA
66 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * *
5961 AATTTGTTTACAAAATCACAAACTATTTAGACCAAAAGACGCGATTTCTGGAGCATGGAAGGTTC
131 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-TCGAGCATGGAATGTTC
6026 -ACAAAATGGCTCAAAGGAATG
195 GA-AAAATGGCTCAAAGGAATG
* * * *
6047 GATAGTCTTGAACACTTTGAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTCGACTAGTTCGT
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGT
* * * * *
6112 GAGTTCGTCCTAGAACCACA-AGAGAAACAATTCTCACGTAAATAGGTTTTTAATTCGAAGACTA
66 AAGTTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * * ** * *
6176 AAAGTTGTTTACATAATGACAAAGTTTTTAGACCGAATGATACGATTCCCGAGCATGGAAAGCTC
130 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCGAGCATGGAATGTTC
6241 GAAAAATTGG-TCGAAA-GAATG
195 GAAAAA-TGGCTC-AAAGGAATG
* * * * * ** *
6262 GATCGTTTTGAGTACTCTCAGGAACTTAAGTTACAAAAGA
1 GATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
6302 GCTATTAAAT
Statistics
Matches: 4929, Mismatches: 974, Indels: 365
0.79 0.16 0.06
Matches are distributed among these distances:
213 3 0.00
214 263 0.05
215 1390 0.28
216 2442 0.50
217 332 0.07
218 260 0.05
219 232 0.05
220 7 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (215 bp):
GATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGT
AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCGAGCATGGAATGTTCG
AAAAATGGCTCAAAGGAATG
Found at i:809 original size:431 final size:429
Alignment explanation
Indices: 5--6301 Score: 5877
Period size: 431 Copynumber: 14.6 Consensus size: 429
1 GATA
* * *
5 GTCTTGAATACTTTAAGGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGT
1 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* * * *
70 TCGTCCGAGAACCAACAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAATT
66 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
* * * *
135 TGTTTACAAAATCACAAACTATTTAGACCAAAAGATGCGATTT-TCGGAGCATGAAATGTTCAGA
131 TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTGA-A
* * *
199 AAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTGAGGAACCAAAGTTATAAAAGAACTCGTA
194 AAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT-GTA
* * * * * ** * *
264 AAAGTTCGACTAGTTTGTAAGTTCGTCCTAGAACCACTAGAGAAACAATTCACATGTAAATAGGT
258 AAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGT
* * * * * * *
329 TTTTAATTCGAAGACTAAAAGTTATTTACATAATGACAAAGTTTTTAGA-CAGAATGATACGA-T
323 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA-AATGATGCGATT
* *
392 TCCGGAGCGTGGAAAGTTCGAAAAATTGGTCGAAGGAATGGATC
387 TCC-GAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATC
* * * ** * * ** * * *
436 GTCTTGAGTACTCTCAGGAACTTAAGTTACAAAAGAGCTATTAAATGTTCCG-CAAGTACGGAAG
1 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT-TGACAAGTTCGGAAG
* * *
500 TTCGTCCAAAAACCATGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAA
65 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * *
565 TTGTTTAGAAAATAATAACCTATTTAGACCAAATGATGTC-ATTTCTCGAGCATGGAATGCTTGA
130 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCTCGAGCATGGAATG-TTGA
* * ** * * * * *
629 AAAATTGCACAAAGGAATGGGTCACCTTCAGTAGTTTAAGGAACCGAAGTTATAAAATAACTGAT
193 AAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTG-T
* ** *
694 AAAAAGTTTGACAATTTTAAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTGTCATGTAAAT-A
257 -AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAA
* * * * * *
758 -TTTTTAATT-AGAAGGCGAAAAGTTGATTACAAAAATAAAAAACTATTTAGACCAAACGATGCG
321 GTTTTTAATTCA-AAGACCAAAAGTTGTTTAC-AAAATGACAAACTATTTAGACCAAATGATGCG
* * * *
821 ATTTCCCAAGCATAGAATGTTCGGAAAATTGCTCGAAGGAATGGATC
384 ATTT-CCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATC
* ** * * * * *
868 GTCTTAAATACTTTAAGGAACTGAATTTATAAAAGAACTCATAAAAGCTAGACAAGTTCGAAAG-
1 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* ** * * * *
932 TCAG-CCAGGAATAAAGAGAGAAACAGTTCTTACGTAAATAAATTTTTAATTCGAAGACCAAAAG
66 TC-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* *
996 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTCGAGCATGGAATGCTCGAA
130 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG-TTGAA
* * * * * *
1061 AAA-TGTCTCAAATGATTGGATAGTCTTGAGTACTTTTAAGGAACCAAAGTTGTAAAAGAACTCA
194 AAATTG-CTCAAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCAAAGTTATAAAAGAACT-G
* * ** *
1125 TAAAAGTTTGACTAGTTCGTAAGTTCGTCTGAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
256 TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAA
* * * * ***
1190 GTTTTTAATTTAAAGACCAAAATTTGTTTACAAAATTAAAAAAC-ATTTAGAATGAATGATGCGA
321 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA-TGACAAACTATTTAGACCAAATGATGCGA
* ** *
1254 TTTCCCGAGCATGGAATGCTCGAAAAATTATTCGAAGGAATGGGTC
385 TTT-CCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATC
* * * * * * * *
1300 ATCTTTAATACTCTCAGAAACCGAAGTTATAAAAGAACTGGTAAATA-TTTGACAAGTTCTGAAG
1 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA-AGTTTGACAAGTTCGGAAG
* *
1364 TTCGTCCAAGAACCAAGAGAGAAACAATCCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAG
65 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-
*
1429 GTT-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGA
129 GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG-TTGA
* * * * *
1493 AAATTTGCACAAAGGAACGGATCGTCTTTAATACTGTCAA-GAACCAAAGTTATAATAAAAGAAC
193 AAAATTGCTCAAAGGAATGGATCGTCTTGAATACT-TTAAGGAACCAAAG-T-T-ATAAAAGAAC
** * * ** *
1557 TTGTAAATTTTTGAAAAGTTTGAAAGTTAATCCAAGAACCAAGAGAGAAA-ATATTCTCATGCAA
254 -TGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACA-ATTCTCATGTAA
* * * * * *
1621 ATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCATATGACAAACTATTTTGACCAAATGATG
317 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * * * *
1686 CAATTTTTCGAGAATGGAATGTTCAAAAAATTGGTTGAAGGAATGCATC
382 CGA-TTTCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATC
* * * * ** * *
1735 TTCTTAAATACTATT-AGGAACCAAATTTATAAAAGAACTTGTAAATTTTTGAAAAGTTCGAAAG
1 GTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
* * *
1799 TTCATCCAAGAACTAGGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
65 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * *
1864 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCTATTTCTCGAGCATGGAATGCTCGAA
130 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG-TTGAA
* * * * *
1929 AAATGGCTCAAATGAATGGATAGTCTTGAATACATTAAGGAACCAAAGCTATAAAAGAACTCGTA
194 AAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT-GTA
* * * * *
1994 AAAGTTTGACTAGTTCGTAAGTTTGTCCGAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
258 AAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGT
* * * * * * *
2059 TTTTAATTAAAAAACCAAAATTTGTGTACAAAATCACAAACTATTTAGACCAAAAGATACGATTT
323 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * *
2124 CTGGATCATGGAATGTTC-AGAAAA-TGGCACAAAGGAATGGATA
388 C-CGAGCATGGAATGTTCGA-AAAATTGG-TCGAAGGAATGGATC
* *
2167 GTCTTGAATACTTTGAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTCT-ACTAA-TTCGTAA
1 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT-TGAC-AAGTTCGGAA
* * * *
2230 GTTCGTCCTAGAACCACA-AGAGAAACAATTCTCACGTAAATAGGTTTTTAATTCGAAGACTAAA
64 GTTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * * * * * *
2294 AGTTGTTTACATAATGACAAAGTTTTTAGACCGATTGATACGA-TTCCCGAGCATGGAAAGTTCG
128 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTT-G
* * * * * ** * ** *
2358 AAAAATTGGTCGAAGGAATGGATCGTCTTGAGTACTCTCAGGAACTTAAGTTACAAAAGAGTTAT
192 AAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT-G
* * * * * * *
2423 TAAATGTTCCG-CAAGTACGGAAGTTTGTTC-AGAAACCATGAGAGAAACAATTCTCATGTAAAT
256 TAAAAGTT-TGACAAGTTCGAAAGTTCGTCCAAG-AACCAAGAGAGAAACAATTCTCATGTAAAT
* * * * **
2486 AAGTTTTTAATTCAAAGACCAAAAATTGTTTAGAAAATGATAATCTATTTAGAAAAAATGATGTC
319 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-C
** *
2551 -ATTTCTCGAGCATGGAATGCTT-GAAAAATTGCAC-AAGGGAATGGGTC
383 GATTTC-CGAGCATGGAATG-TTCGAAAAATTGGTCGAA-GGAATGGATC
** * * * * * * * *
2598 ACCTTTAGTAGTTTAAGGAACCGAAGTGATAAAAGAACTCGTAAAAGTTCGACTAGTTCGTAAGT
1 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* * * * **
2663 TCGTCCTAGAACCATA-AGAGAAACAATTCTCATGTAAATAGGTTTTTAATTCGAAGAATAAAAG
66 TCGTCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * * * * *
2727 TTATTTACATAATGACAAAGTTTTTAGACCGAATGATACGA-TTCCCGAGCTTGGAAAGTTCGAA
130 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTT-GAA
* * * * * ** * * *
2791 AAATTGGTCAAAGGAATGGATCGTTTTGAGTACTCTCAGGAACTTAAGTTACAAAAGAGCTATTA
194 AAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT-GTA
* * * * * * *
2856 AATGTTCCG-CAAGTACGGAAGTTCGTCCAAAAACCATGAGAGAAACAATTCTCACGTAAATAAG
258 AAAGTT-TGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAG
* * * *
2920 TTTTTAATTCAAAGACCAAAAATTGTTTAGAAAATGATAACCTATTTAGACCAAATGATGTC-AT
322 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGAT
** * *
2984 TTCTCGAGCATGGAATGCTT-GAAAAATTGCACAAAGGAATGGGTC
386 TTC-CGAGCATGGAATG-TTCGAAAAATTGGTCGAAGGAATGGATC
** * * * * * **
3029 ACCTTTAGTAATTTAAGGAACCGAAGTTA-AAAAGGAACT-GATAAAAAGTTTTACAAGTTTAGA
1 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAA-GAACTCG-T-AAAAGTTTGACAAGTTCGGA
* * * * * * *
3092 TGTTCGTCCAAGAACCAAGAGAGAAATAATTATCATGTAAAT-A-TTTTTAATTCGAAGGCAAAA
63 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * * * *
3155 AGTTGATTACAAAATGAAAAACTATTTAGACCAAACGATGCGATTT-TCCAAGCGTAGAATGTTC
128 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-CGAGCATGGAATGTT-
* **
3219 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTC
191 GAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT-
* * * * ** * *
3284 ATAAAAGCTAGACAAGTACGAAAGTTCAG-CCAAGAAGAAAGAGAGAAACAGTTCTGATGTAAAT
255 GTAAAAGTTTGACAAGTTCGAAAGTTC-GTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAAT
* * *
3348 AAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATAATGCG
319 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* * * *
3413 ATTTTTCGAGCATTGAATGTTCAAAAAACTGGTCGAA-GAATAGGATC
384 A-TTTCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAAT-GGATC
* * * * *
3460 GGCTTGAACAATTTAAGGAACCGAGGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
1 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* * * * * *
3525 TCATCAAAAAACCAAGAGAGAAACTATTCTCACATAAATAAGTTTTCAATTCAAAGACCAAAAGG
66 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-G
*
3590 TT-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTG-A
130 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG-TTGAA
* * * * *
3653 AAATTGCACATAGGAATGGATCGTCTTTAATACTGTCAA-GAACTAAAGTTAAAATAAAAGAACT
194 AAATTGCTCAAAGGAATGGATCGTCTTGAATACT-TTAAGGAACCAAAGTT---ATAAAAGAAC-
** * * ** * *
3717 TGTAAATTTTTGAAAAGTTTGAAAGTTAATCCAAGAACCATGAGAGAAA-ATATTCTCATGCAAA
254 TGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACA-ATTCTCATGTAAA
* * * * *
3781 TTAA-TTTTAAATTCAAACACCAAAAGTTGTTTACCATATGACAAACTATTTTGACCAAATGATG
318 -TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * * *
3845 CAATTTTTCGAGAATGGAATGTTCGAAAAATTGGTTGAAGGAATGCATC
382 CGA-TTTCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATC
* * * ** * **
3894 TTCTTAAATACTATT-AGGAACCAAAGTTATAAAAGAACTTGTAAATTTTTGAAAAGTTTAGAAG
1 GTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
* **** * * * *
3958 TTCATCCAAGAATTGGGAGAGAAACAATTATCAC-TTAATTAGTTTTTAATTCAAAGACCGAAAG
65 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * *
4022 TTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGCTCGGA
130 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG-TTGAA
* * * * *
4087 AAATGGCTCAAATGAATGGATAGTCTTGAACACTTTAAGGAACCAAAGTTGTAAAAGAACTCGTA
194 AAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT-GTA
* * * * *
4152 AAAGTTTGACTAGTTCGTAAGTTTGTCCGAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGT
258 AAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGT
* ** * * * *
4217 TTTTAATTAAAAGAGAAAAATTTGTTTACAAAATCACAAACTATTTAGACCAAAAGACGCGATTT
323 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TT
* * * *
4282 TCGGAGCATGGAAGGTTC-ACAAAA-TGGCTCAAAGGAATGGATA
387 TCCGAGCATGGAATGTTCGA-AAAATTGG-TCGAAGGAATGGATC
* * *
4325 GTCTTGAACACTTTAAGGAACCAAAGTT-TAAAAAGAACTCGTAAAAGTTCGACTAGTTCGTG-A
1 GTCTTGAATACTTTAAGGAACCAAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCG-GAA
* * * * *
4388 GTTCATCCTAGAACCACA-AGAGAAACAATTCTCACGTAAATAGGTTTTTAATTCGAAGACTAAA
64 GTTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * ** * * * * * *
4452 AGATGTTTACATAATGACAATGTTTTTAGACCGAATGATACGATTCCT-GAGCTTGGAAAGTTCG
128 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTT-G
* * * * * * * ** * * *
4516 AAAAATTGGTCGACGGAATGGATCGTTTTGAGTACTCTCAGGAACTTAAGTTACAAAAGAGCTAT
192 AAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT-G
* * * * * *
4581 TAAATGTTCCG-CAAGTACGGAAA-TTCGT-CAAAAACCATGAGAGAAACAATTCTCACGTAAAT
256 TAAAAGTT-TGACAAGTTC-GAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAAT
* * * *
4643 AAGTTTTTAATTCAAAGACCAAAAATTGTTTAGAAAATGATAACCTATTTAGACCAAATGATGTC
319 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-C
** * *
4708 -ATTTCTCGAGCATGGAATGCTT-GAAAAATTGCACAAAGGAATGGGTC
383 GATTTC-CGAGCATGGAATG-TTCGAAAAATTGGTCGAAGGAATGGATC
** * * * * * **
4755 ACCTTTAGTAGTTTAAGGAACCAAAGTTATAAAGGAACT-GATAAAAAGTTTTACAAGTTTAGAA
1 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCG-T-AAAAGTTTGACAAGTTCGGAA
* * * * * * *
4819 GTTCATCCAAGAACCAAGAGAGAAACAATTGTCATGTAAAT-A-TTTTAAATTAAAAGGCGAAAA
64 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * * * * * *
4882 GTTGATTACAAAATGAAAAACTATTTAGACCAAACGATGCGATTTCCCAAGCGTAGAATGTTCGA
129 GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTT-GA
* ** *
4947 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCAT
193 AAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT-GT
* * ** * *
5012 AAAAGCTAGACAAGTTCGAAAGTTCAG-CCAAGAAGAAAGAGAGAAACAGTTCTGATGTAAATAA
257 AAAAGTTTGACAAGTTCGAAAGTTC-GTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAA
* * ** *
5076 GTTTTTTATTCAAAGAGCAAAAGTTGTTTAGGAAATGACAAACTATTTAGACCAAATAATGCGAT
321 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-
* * *
5141 TTTCCGAGCATTGAATGTTCGAAAAACTGGTCGAA-GAATAGGATT
385 TTTCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAAT-GGATC
* * * * *
5186 GACTTGAATAATTTAAGGAACCGAGGTTATACAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
1 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* * * *
5251 TCATCCAAAAACCAAGAGATAAACAATTCTCACGTAAATAAGTTTTCAATTCAAAGACCAAAAAG
66 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAAG
* * * * *
5316 TT-TTTAAAAAATGAAAAACTATTTAGACCAAATGATACGATTTCCCGAGCTTGGAATGTTTGAA
130 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG-TTGAA
* * * * *
5380 AAATTGCACATAGGAATGGATCGTCTTTAATACTGTCAA-GAATCAAAGTTATAATAAAAGAACT
194 AAATTGCTCAAAGGAATGGATCGTCTTGAATACT-TTAAGGAACCAAAG-T-T-ATAAAAGAAC-
** * ** *
5444 TGTAAATTTTTGA-AAGTTTGAAAGTTAATCCAAGAACCAAGAGAGAAA-ATATTCTCATGCAAA
254 TGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACA-ATTCTCATGTAAA
* * * * * * *
5507 TAAATTTTAAATTCAAACACCAAAAGTTGTTTACCATATGACAAACTATTTTGACTAAATGATGC
318 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * * *
5572 AATTTTTCGAGAATGGAATGTTCGAAAAATTGGTTGAAGGAATGCA-C
383 GA-TTTCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATC
* * * * * * ** * *
5619 TTATTAAATACTATT-AGGAACCAAAGTTATTAAAGAAGTTGTAAATTTTTGAAAAGTTCAGAAG
1 GTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
* **** *
5683 TTCATCCAAGAATTGGGAGAGAAACTATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
65 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * *
5748 TTGTTTACGAAATGACAAACTATTTAGACCAAATGATACGATTTCTCGAGCATGGAATGCTCGAA
130 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG-TTGAA
* * * *
5813 AAATGGCTCAAATGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTGTAAAAGAACTCGTA
194 AAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT-GTA
* * * *
5878 AAAGTTTGACTAGTTCGTAAGTTCGTCCGAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGT
258 AAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGT
* * * * *
5943 TTTTAATTTAAAGACCAAAATTTGTTTACAAAATCACAAACTATTTAGACCAAAAGACGCGATTT
323 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * *
6008 CTGGAGCATGGAAGGTTC-ACAAAA-TGGCTCAAAGGAATGGATA
388 C-CGAGCATGGAATGTTCGA-AAAATTGG-TCGAAGGAATGGATC
* * * *
6051 GTCTTGAACACTTTGAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTCGACTAGTTCGTG-AG
1 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-GAAG
* * * *
6115 TTCGTCCTAGAACCACA-AGAGAAACAATTCTCACGTAAATAGGTTTTTAATTCGAAGACTAAAA
65 TTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * * * * * * *
6179 GTTGTTTACATAATGACAAAGTTTTTAGACCGAATGATACGA-TTCCCGAGCATGGAAAGCTCGA
129 GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG-TTGA
* * * * * ** *
6243 AAAATTGGTCGAAA-GAATGGATCGTTTTGAGTACTCTCAGGAACTTAAGTTACAAAAGA
193 AAAATTGCTC-AAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
6302 GCTATTAAAT
Statistics
Matches: 4816, Mismatches: 900, Indels: 300
0.80 0.15 0.05
Matches are distributed among these distances:
429 62 0.01
430 473 0.10
431 1995 0.41
432 1036 0.22
433 470 0.10
434 406 0.08
435 368 0.08
436 6 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (429 bp):
GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTGAAAA
ATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTGTAAAA
GTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTT
TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCG
AGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATC
Done.