Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001365.1 Kokia drynarioides strain JFW-HI SEQ_112824, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2181
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.37


Found at i:669 original size:269 final size:268

Alignment explanation


    Indices: 190--728  Score: 1006
    Period size: 269  Copynumber: 2.0  Consensus size: 268

        180 TTTGCATATA

                                                                             
        190 AATTGATGAATAATTATTTTTTCTGTTTATATATAAATTATGAATTATTGTTTTTTAAGCGAGTA
          1 AATTGATGAATAATTATTTTTTCTGTTTATATATAAATTATGAATTATTGTTTTTTAAGCGAGTA

                                                      *                      
        255 ATTTAATGAGTAGGTTTTGGTTACGAAATTGGATCAACTTATTATTTTTGATAGAGTAAGAGGAC
         66 ATTTAATGAGTAGGTTTTGGTTACGAAATTGGATCAACTTATCATTTTTGATAGAGTAAGAGGAC

                                                                             
        320 TAAATTTAAATACATTAAAATAGACGGATTAATTTATTAATTTCTGTAAAGCTGAGGGATGAAAA
        131 TAAATTTAAATACATTAAAATAGACGGATTAATTTATTAATTTCTGTAAAGCTGAGGGATGAAAA

               *                    *                                        
        385 TCATGATTAGACCATTAAGAAAAGGAAAGAGGAGGGAAAAAGAAAGCAAGATAATTCTTGGAAAA
        196 TCAAGATTAGACCATTAAGAAAAGAAAAGAGGAGGGAAAAAGAAAGCAAGATAATTCTTGGAAAA

                     
        450 AGAAGCAGC
        261 AGAAGC-GC

                                                                        *    
        459 AATTGATGAATAATTATTTTTTCTGTTTATATATAAATTATGAATTATTGTTTTTTAAGCTAGTA
          1 AATTGATGAATAATTATTTTTTCTGTTTATATATAAATTATGAATTATTGTTTTTTAAGCGAGTA

                    *                                         *              
        524 ATTTAATGGGTAGGTTTTGGTTACGAAATTGGATCAACTTATCATTTTTGGTAGAGTAAGAGGAC
         66 ATTTAATGAGTAGGTTTTGGTTACGAAATTGGATCAACTTATCATTTTTGATAGAGTAAGAGGAC

                        *                                                    
        589 TAAATTTAAATATATTAAAATAGACGGATTAATTTATTAATTTCTGTAAAGCTGAGGGATGAAAA
        131 TAAATTTAAATACATTAAAATAGACGGATTAATTTATTAATTTCTGTAAAGCTGAGGGATGAAAA

                                                                             
        654 TCAAGATTAGACCATTAAGAAAAGAAAAGAGGAGGGAAAAAGAAAGCAAGATAATTCTTGGAAAA
        196 TCAAGATTAGACCATTAAGAAAAGAAAAGAGGAGGGAAAAAGAAAGCAAGATAATTCTTGGAAAA

                    
        719 AGAAGCGC
        261 AGAAGCGC

              
        727 AA
          1 AA

        729 AGGTCTTTCT


Statistics
Matches: 263,  Mismatches: 7, Indels: 1
        0.97            0.03        0.00

Matches are distributed among these distances:
 268    4  0.02
 269  259  0.98

ACGTcount: A:0.41, C:0.06, G:0.19, T:0.34


Consensus pattern (268 bp):   
AATTGATGAATAATTATTTTTTCTGTTTATATATAAATTATGAATTATTGTTTTTTAAGCGAGTA
ATTTAATGAGTAGGTTTTGGTTACGAAATTGGATCAACTTATCATTTTTGATAGAGTAAGAGGAC
TAAATTTAAATACATTAAAATAGACGGATTAATTTATTAATTTCTGTAAAGCTGAGGGATGAAAA
TCAAGATTAGACCATTAAGAAAAGAAAAGAGGAGGGAAAAAGAAAGCAAGATAATTCTTGGAAAA
AGAAGCGC
Done.