genome.fa.s13651.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013651.1 Kokia drynarioides strain JFW-HI SEQ_128679, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82920

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2259--2397	43	3.2	43	82	0	170	23	18	27	30	1.98
4382--4420	20	2.0	20	90	9	64	30	0	5	64	1.15
6398--6470	27	2.8	25	82	12	85	41	0	24	34	1.55
8000--8074	17	4.3	17	83	8	89	42	2	2	52	1.29
8000--8074	35	2.1	35	85	9	100	42	2	2	52	1.29
19499--19715	115	1.9	115	88	1	328	35	19	22	22	1.96
19662--20001	186	1.8	186	86	0	491	37	17	21	23	1.94
20524--20632	35	3.1	34	84	10	125	44	0	2	52	1.21
20555--20632	6	13.5	6	72	17	67	46	1	1	51	1.17
20558--20613	11	4.9	11	82	10	60	39	1	1	57	1.20
20524--20632	52	2.1	52	87	0	155	44	0	2	52	1.21
20524--20632	17	6.3	17	83	6	130	44	0	2	52	1.21
22350--22461	29	3.9	28	73	15	77	33	30	4	32	1.78
22350--22630	58	5.0	58	75	11	278	33	29	4	32	1.77
22383--22464	29	2.8	29	75	12	87	36	30	4	28	1.78
22460--22637	29	6.1	29	74	12	123	33	29	4	32	1.78
22353--22568	107	2.0	108	84	2	283	33	29	4	33	1.77
22460--22731	59	4.8	57	73	14	224	30	28	4	36	1.77
22342--22731	166	2.3	167	92	3	635	31	29	4	34	1.77
22658--22753	31	3.2	31	77	12	101	31	26	4	38	1.75
24100--24124	9	2.8	9	100	0	50	72	0	8	20	1.10
27020--27168	67	2.2	67	98	0	289	38	20	11	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27354--27379	12	2.2	12	100	0	52	42	15	7	34	1.75
31025--31126	23	4.5	22	85	6	123	43	23	20	12	1.86
42301--42387	39	2.2	39	91	0	138	32	9	25	33	1.87
49359--49445	39	2.2	39	91	0	138	32	9	25	33	1.87
51697--51748	21	2.5	20	82	14	61	25	15	25	34	1.95
68165--68551	209	1.9	209	85	4	548	39	16	21	23	1.92
68364--68712	161	2.2	161	88	0	509	36	17	21	24	1.95
68534--69092	209	2.7	204	86	1	611	37	16	22	23	1.93
68603--68761	85	1.9	85	81	2	194	35	13	23	26	1.93
68165--68939	370	2.1	370	86	0	1077	38	16	21	23	1.93
70089--70121	11	3.0	11	90	0	57	69	0	0	30	0.88
71048--71220	30	5.8	29	80	10	172	36	25	1	36	1.64
71047--71220	59	2.9	59	84	6	201	36	25	1	36	1.64
80481--80510	15	2.0	15	93	0	51	26	3	0	70	1.03

Tables:   1

The End!