Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013654.1 Kokia drynarioides strain JFW-HI SEQ_128682, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3637
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35


Found at i:695 original size:204 final size:202

Alignment explanation


    Indices: 345--847  Score: 668
    Period size: 204  Copynumber: 2.5  Consensus size: 202

        335 TTTCATCAGG

                         *  **  *       * *                                  
        345 ATTTGGTTCACTTTTCGGTATCTCATCAGGGAGCTAACCATTTTATGGCTTCGACCTGCTTCTCA
          1 ATTTGGTTCACTTCTCAATACCTCATCAAGAAGCTAACCATTTTATGGCTTCGACCTGCTTCTCA

             *                   *                **               **        
        410 GCGTCTCATCAGGAAGCTGGGATTCGAAGA-TTTGCTCGTTTTAAGCCTCGTTTGGGTCTTCTTC
         66 GTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTCACTTTAAGCCTCGTTTGAATCTTCTTC

                                   **   *    *                               
        474 TCAGTGCCTCATCAGGAAGATGATTACATTGCTGTTTGTTTCAATTCGCTCCTCCGTATCTCATC
        131 TCAGTGCCTCATCAGGAAGATGACCAC-GT-C-ATTTGTTTCAATTCGCTCCTCCGTATCTCATC

            *         
        539 CGGAAGACGA
        193 AGGAAGACGA

                      *            *                      *                  
        549 ATTTGGTTCATTTCTCAATACCTTATCAAGAAGCTAACC-TTTTATTGCTTCGACCTGCTTCTCA
          1 ATTTGGTTCACTTCTCAATACCTCATCAAGAAGCTAACCATTTTATGGCTTCGACCTGCTTCTCA

                                                       *                     
        613 GTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTCACTTTGAGCCTCGTTTGAATCTTCTTC
         66 GTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTCACTTTAAGCCTCGTTTGAATCTTCTTC

                  *                  *                     *   *             
        678 TCAGTGTCTCATCAGGAAGATGACCGCGTCATTTGTTTCAATTCGCTTCTCTGTATCTCATCAGG
        131 TCAGTGCCTCATCAGGAAGATGACCACGTCATTTGTTTCAATTCGCTCCTCCGTATCTCATCAGG

               *   
        743 AAGGCGA
        196 AAGACGA

                             *  *       * *         *                *      *
        750 ATTTGGTTCACTTCTCAGTATCTCATCAGGGAGCTAACCACTTTATGGCTTCGACCTACTTCTCT
          1 ATTTGGTTCACTTCTCAATACCTCATCAAGAAGCTAACCATTTTATGGCTTCGACCTGCTTCTCA

                                             
        815 GTGTCTCATCAGGAAGCTGGGGTTCGAAGATTT
         66 GTGTCTCATCAGGAAGCTGGGGTTCGAAGATTT

        848 GCTTACATGG


Statistics
Matches: 261,  Mismatches: 36, Indels: 6
        0.86            0.12        0.02

Matches are distributed among these distances:
 201   70  0.27
 202   55  0.21
 203   53  0.20
 204   83  0.32

ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36


Consensus pattern (202 bp):   
ATTTGGTTCACTTCTCAATACCTCATCAAGAAGCTAACCATTTTATGGCTTCGACCTGCTTCTCA
GTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTCACTTTAAGCCTCGTTTGAATCTTCTTC
TCAGTGCCTCATCAGGAAGATGACCACGTCATTTGTTTCAATTCGCTCCTCCGTATCTCATCAGG
AAGACGA
Done.