Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013661.1 Kokia drynarioides strain JFW-HI SEQ_128689, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6159
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33


Found at i:6089 original size:39 final size:39

Alignment explanation


    Indices: 6035--6117  Score: 112
    Period size: 39  Copynumber: 2.1  Consensus size: 39

       6025 TTAACTCAGT

                            **     *               
       6035 AAATTTAATAGTTACCGTTTAATGGAGACCAAAATTTTA
          1 AAATTTAATAGTTACCACTTAATAGAGACCAAAATTTTA

                                **       *         
       6074 AAATTTAATAGTTACCACTTGGTAGAGACTAAAATTTTA
          1 AAATTTAATAGTTACCACTTAATAGAGACCAAAATTTTA

                 
       6113 AAATT
          1 AAATT

       6118 CGAATACCAA


Statistics
Matches: 38,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  39   38  1.00

ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36


Consensus pattern (39 bp):   
AAATTTAATAGTTACCACTTAATAGAGACCAAAATTTTA
Done.