Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013665.1 Kokia drynarioides strain JFW-HI SEQ_128693, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 84150
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34
Warning! 65 characters in sequence are not A, C, G, or T
Found at i:1823 original size:5 final size:5
Alignment explanation
Indices: 1786--1819 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
1776 GTGGGAATCT
* *
1786 AAAGG AAAGG AAAGG AAAGG AAAGA AAAGA AAAG
1 AAAGG AAAGG AAAGG AAAGG AAAGG AAAGG AAAG
1820 AAAAACTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (5 bp):
AAAGG
Found at i:5025 original size:23 final size:23
Alignment explanation
Indices: 4958--5042 Score: 64
Period size: 23 Copynumber: 3.7 Consensus size: 23
4948 ATTAATATTA
4958 TTCGTGAACATATTCAATTATATG
1 TTCGTGAACATATTCAATTA-ATG
* * * ***
4982 TTCATGAATATTTTTGTTTAATG
1 TTCGTGAACATATTCAATTAATG
*
5005 TTCGTGAACATGTTCAATTAA-G
1 TTCGTGAACATATTCAATTAATG
**
5027 TTAAATGAACATATTC
1 TT-CGTGAACATATTC
5043 GTGAACATTA
Statistics
Matches: 45, Mismatches: 15, Indels: 3
0.71 0.24 0.05
Matches are distributed among these distances:
22 3 0.07
23 28 0.62
24 14 0.31
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.44
Consensus pattern (23 bp):
TTCGTGAACATATTCAATTAATG
Found at i:6990 original size:30 final size:29
Alignment explanation
Indices: 6922--6992 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 29
6912 TTTATTAGTT
*
6922 TATATTTTTATAATTTTTAAAGGATCAAA
1 TATAATTTTATAATTTTTAAAGGATCAAA
*
6951 TCA-ATATTTTATAA-TTTTAAGGGGATCAAAA
1 T-ATA-ATTTTATAATTTTTAA-AGGATC-AAA
6982 TATAATTTTAT
1 TATAATTTTAT
6993 CTTTACTAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
29 8 0.23
30 22 0.63
31 5 0.14
ACGTcount: A:0.41, C:0.04, G:0.08, T:0.46
Consensus pattern (29 bp):
TATAATTTTATAATTTTTAAAGGATCAAA
Found at i:10211 original size:23 final size:23
Alignment explanation
Indices: 10182--10238 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
10172 ATGAGAAAAG
10182 AGAAAAATAAAGAGAAGAAAAA-A
1 AGAAAAATAAAGA-AAGAAAAATA
* *
10205 AGGAAAATAAAGAAATAAAAATA
1 AGAAAAATAAAGAAAGAAAAATA
10228 AGAAAAATAAA
1 AGAAAAATAAA
10239 TTGTTCAAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
22 7 0.23
23 23 0.77
ACGTcount: A:0.77, C:0.00, G:0.14, T:0.09
Consensus pattern (23 bp):
AGAAAAATAAAGAAAGAAAAATA
Found at i:10227 original size:14 final size:15
Alignment explanation
Indices: 10182--10238 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
10172 ATGAGAAAAG
* *
10182 AGAAAAATAAAGAGA
1 AGAAAAATAAAAATA
*
10197 AGAAAAAAAGGAAAATA
1 AGAAAAATA--AAAATA
*
10214 A-AGAAATAAAAATA
1 AGAAAAATAAAAATA
10228 AGAAAAATAAA
1 AGAAAAATAAA
10239 TTGTTCAAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
14 7 0.21
15 16 0.48
16 5 0.15
17 5 0.15
ACGTcount: A:0.77, C:0.00, G:0.14, T:0.09
Consensus pattern (15 bp):
AGAAAAATAAAAATA
Found at i:11746 original size:18 final size:21
Alignment explanation
Indices: 11720--11762 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
11710 AAAAAAAATT
*
11720 AAATAATTT-TCAAAATT-CA
1 AAATAATTTATAAAAATTCCA
11739 AAAT-ATTTATAAAAATTCCA
1 AAATAATTTATAAAAATTCCA
11759 AAAT
1 AAAT
11763 TTATATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 4 0.19
19 11 0.52
20 6 0.29
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (21 bp):
AAATAATTTATAAAAATTCCA
Found at i:11764 original size:18 final size:19
Alignment explanation
Indices: 11731--11767 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
11721 AATAATTTTC
11731 AAAATTCAAAATATTTATA
1 AAAATTCAAAATATTTATA
*
11750 AAAATTCCAAA-ATTTATA
1 AAAATTCAAAATATTTATA
11768 TTTTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAATTCAAAATATTTATA
Found at i:13663 original size:24 final size:24
Alignment explanation
Indices: 13635--13690 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
13625 TAGACTAATA
*
13635 AGAGTTTGACTCAAACAAATAAAC
1 AGAGTTTAACTCAAACAAATAAAC
* * *
13659 AGAGTTTAATTGAAACAAATAAAT
1 AGAGTTTAACTCAAACAAATAAAC
13683 AGAGTTTA
1 AGAGTTTA
13691 TCTGAAAGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.50, C:0.09, G:0.14, T:0.27
Consensus pattern (24 bp):
AGAGTTTAACTCAAACAAATAAAC
Found at i:14311 original size:22 final size:21
Alignment explanation
Indices: 14286--14333 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
14276 CAAATATTGA
*
14286 TTAATAATAGGATAAATTAAGG
1 TTAATAAGAGGATAAATTAA-G
* * *
14308 TTAAAAAGATGATTAATTAAG
1 TTAATAAGAGGATAAATTAAG
14329 TTAAT
1 TTAAT
14334 TATGAAAGTT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (21 bp):
TTAATAAGAGGATAAATTAAG
Found at i:15355 original size:41 final size:41
Alignment explanation
Indices: 15132--15403 Score: 240
Period size: 41 Copynumber: 6.5 Consensus size: 41
15122 TATGTATAAA
*** * * ** *
15132 AAGGAAGACTCATGTCTCGGGTTGAGTATAAGAAATTGTATA
1 AAGGAAGACTCATGTCTCGAAATGAGAATGAGATTTTG-ATT
* * * * *
15174 AATGGAAGACTCGTGTCTCGAGATGAGAATGAGACTATGAAT
1 AA-GGAAGACTCATGTCTCGAAATGAGAATGAGATTTTGATT
* * * * *
15216 AAGGAAGATTCATGACCCAAAATGAGAAT-AGATTTTGAAT
1 AAGGAAGACTCATGTCTCGAAATGAGAATGAGATTTTGATT
*
15256 AAGGAAGACTCATGTCTCGAAATGAGAATGAGACTTTTTTTTATT
1 AAGGAAGACTCATGTCTCGAAATGAGAATGAGA----TTTTGATT
15301 AAGGAAGACTCATGTCTCGAAATGAGAATGAGATTTTGATT
1 AAGGAAGACTCATGTCTCGAAATGAGAATGAGATTTTGATT
* * * * *
15342 AAGGAAGACTCATGTCTCGAGATGAGAATTAGAATATGGTT
1 AAGGAAGACTCATGTCTCGAAATGAGAATGAGATTTTGATT
* *
15383 AAAGGAAGACTTATGACTCGA
1 -AAGGAAGACTCATGTCTCGA
15404 TAGAGCATAA
Statistics
Matches: 191, Mismatches: 32, Indels: 14
0.81 0.14 0.06
Matches are distributed among these distances:
40 34 0.18
41 67 0.35
42 23 0.12
43 28 0.15
45 39 0.20
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.28
Consensus pattern (41 bp):
AAGGAAGACTCATGTCTCGAAATGAGAATGAGATTTTGATT
Found at i:15355 original size:86 final size:81
Alignment explanation
Indices: 15132--15403 Score: 256
Period size: 86 Copynumber: 3.2 Consensus size: 81
15122 TATGTATAAA
*** * ** * *
15132 AAGGAAGACTCATGTCTCGGGTTGAGTATAAGAAATTGTATAAATGGAAGACTCGTGTCTCGAGA
1 AAGGAAGACTCATGTCTCGAAATGAGAAT-AGATTTTG-ATTAA-GGAAGACTCATGTCTCGAGA
15197 TGAGAATGAGACTATGAAT
63 TGAGAATGAGACTATGAAT
* * * * * *
15216 AAGGAAGATTCATGACCCAAAATGAGAATAGATTTTGAATAAGGAAGACTCATGTCTCGAAATGA
1 AAGGAAGACTCATGTCTCGAAATGAGAATAGATTTTGATTAAGGAAGACTCATGTCTCGAGATGA
* * *
15281 GAATGAGACTTTTTTTTATT
66 GAATGAGAC----TATGAAT
15301 AAGGAAGACTCATGTCTCGAAATGAGAATGAGATTTTGATTAAGGAAGACTCATGTCTCGAGATG
1 AAGGAAGACTCATGTCTCGAAATGAGAAT-AGATTTTGATTAAGGAAGACTCATGTCTCGAGATG
* * **
15366 AGAATTAGAATATGGTT
65 AGAATGAGACTATGAAT
* *
15383 AAAGGAAGACTTATGACTCGA
1 -AAGGAAGACTCATGTCTCGA
15404 TAGAGCATAA
Statistics
Matches: 152, Mismatches: 30, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
81 30 0.20
82 7 0.05
83 24 0.16
84 21 0.14
85 29 0.19
86 41 0.27
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.28
Consensus pattern (81 bp):
AAGGAAGACTCATGTCTCGAAATGAGAATAGATTTTGATTAAGGAAGACTCATGTCTCGAGATGA
GAATGAGACTATGAAT
Found at i:35196 original size:14 final size:14
Alignment explanation
Indices: 35158--35200 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
35148 AACCATGAAT
* *
35158 CCTAAATCTTATAC
1 CCTAAACCTTAAAC
35172 CCTAAAGCCTTAAAC
1 CCTAAA-CCTTAAAC
*
35187 TCTAAACCTTAAAC
1 CCTAAACCTTAAAC
35201 ATTGGACTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 14 0.56
15 11 0.44
ACGTcount: A:0.40, C:0.30, G:0.02, T:0.28
Consensus pattern (14 bp):
CCTAAACCTTAAAC
Found at i:35288 original size:7 final size:7
Alignment explanation
Indices: 35278--35332 Score: 58
Period size: 7 Copynumber: 7.9 Consensus size: 7
35268 TAGGCTCGAT
35278 GGTTTAA
1 GGTTTAA
35285 GGTTTAA
1 GGTTTAA
35292 GGTTTAA
1 GGTTTAA
*
35299 GATTT-A
1 GGTTTAA
35305 GAGTTTAA
1 G-GTTTAA
*
35313 GGTTCAA
1 GGTTTAA
* *
35320 GATTCAA
1 GGTTTAA
35327 GGTTTA
1 GGTTTA
35333 GAGTTCAAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
6 2 0.05
7 36 0.90
8 2 0.05
ACGTcount: A:0.31, C:0.04, G:0.25, T:0.40
Consensus pattern (7 bp):
GGTTTAA
Found at i:35304 original size:21 final size:21
Alignment explanation
Indices: 35280--35343 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 21
35270 GGCTCGATGG
*
35280 TTTAAGGTTTAAGGTTTAAGA
1 TTTAAGGTTTAAGGTTCAAGA
35301 TTT-AGAGTTTAAGGTTCAAGA
1 TTTAAG-GTTTAAGGTTCAAGA
*
35322 TTCAAGGTTT-AGAGTTCAAGA
1 TTTAAGGTTTAAG-GTTCAAGA
35343 T
1 T
35344 CGATGGTCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
20 4 0.11
21 32 0.84
22 2 0.05
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.39
Consensus pattern (21 bp):
TTTAAGGTTTAAGGTTCAAGA
Found at i:35310 original size:28 final size:28
Alignment explanation
Indices: 35279--35337 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
35269 AGGCTCGATG
* * *
35279 GTTTAAGGTTTAAGGTTTAAGATTTAGA
1 GTTTAAGGTTCAAGATTCAAGATTTAGA
*
35307 GTTTAAGGTTCAAGATTCAAGGTTTAGA
1 GTTTAAGGTTCAAGATTCAAGATTTAGA
35335 GTT
1 GTT
35338 CAAGATCGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.31, C:0.03, G:0.25, T:0.41
Consensus pattern (28 bp):
GTTTAAGGTTCAAGATTCAAGATTTAGA
Found at i:35838 original size:13 final size:13
Alignment explanation
Indices: 35820--35846 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
35810 TCCCTTATTT
35820 TCCTCTCTTTTTC
1 TCCTCTCTTTTTC
35833 TCCTCTCTTTTTC
1 TCCTCTCTTTTTC
35846 T
1 T
35847 TTTTTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (13 bp):
TCCTCTCTTTTTC
Found at i:43899 original size:57 final size:57
Alignment explanation
Indices: 43789--43929 Score: 157
Period size: 57 Copynumber: 2.5 Consensus size: 57
43779 ACAGGTTCGA
* * * *
43789 GTGGACTGTACGAAGAGTTGATTG--TGTTAAAAATATTGGCTTTCTGGAGGTTTGG
1 GTGGATTGTACGGAGAATTGATTGTATGTTAAAAATATTGGATTTCTGGAGGTTTGG
* *
43844 GTGGATTGTACGGAGAATTGATTGTATGTTAAAGATATTGGATTTGTGG-GTGTTTGG
1 GTGGATTGTACGGAGAATTGATTGTATGTTAAAAATATTGGATTTCTGGAG-GTTTGG
* *
43901 ATGGCTT-TACGGAG-ATTGATATGTATGTT
1 GTGGATTGTACGGAGAATTGAT-TGTATGTT
43930 GTTTAAATTA
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
55 27 0.36
56 16 0.22
57 31 0.42
ACGTcount: A:0.23, C:0.05, G:0.33, T:0.39
Consensus pattern (57 bp):
GTGGATTGTACGGAGAATTGATTGTATGTTAAAAATATTGGATTTCTGGAGGTTTGG
Found at i:46445 original size:24 final size:24
Alignment explanation
Indices: 46417--46465 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 24
46407 TAAGACTTTG
46417 ATTGAAACAAATAAA-TAGAGTTTA
1 ATTGAAACAAATAAACTA-AGTTTA
46441 ATTGAAACAAATAAACTAAGTTTA
1 ATTGAAACAAATAAACTAAGTTTA
46465 A
1 A
46466 CTAGAAGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.55, C:0.06, G:0.10, T:0.29
Consensus pattern (24 bp):
ATTGAAACAAATAAACTAAGTTTA
Found at i:49758 original size:26 final size:27
Alignment explanation
Indices: 49721--49771 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
49711 CTTAATCTAG
49721 TTTTTTTAATT-CTAATTATTTTAATA
1 TTTTTTTAATTCCTAATTATTTTAATA
*
49747 TTTTATTT-ATTCCTATTTATTTTAA
1 TTTT-TTTAATTCCTAATTATTTTAA
49772 CATTCTAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (27 bp):
TTTTTTTAATTCCTAATTATTTTAATA
Found at i:56076 original size:3 final size:3
Alignment explanation
Indices: 56068--56093 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
56058 TTCTCCGGCT
56068 TGA TGA TGA TGA TGA TGA TGA TGA TG
1 TGA TGA TGA TGA TGA TGA TGA TGA TG
56094 GATGGTTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.35, T:0.35
Consensus pattern (3 bp):
TGA
Found at i:57548 original size:18 final size:18
Alignment explanation
Indices: 57513--57549 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
57503 AATGTTCATT
*
57513 TAACCGAATTAATAAAAA
1 TAACCGAATTAAGAAAAA
*
57531 TAACCGAATTAAGCAAAA
1 TAACCGAATTAAGAAAAA
57549 T
1 T
57550 TAACTGAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.14, G:0.08, T:0.22
Consensus pattern (18 bp):
TAACCGAATTAAGAAAAA
Found at i:58738 original size:18 final size:19
Alignment explanation
Indices: 58707--58748 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
58697 GAAAAATAAA
*
58707 TTTTAAAATATAAT-TTTT
1 TTTTAAAATATAATATATT
58725 TTTTAAAAGT-TAATATATT
1 TTTTAAAA-TATAATATATT
58744 TTTTA
1 TTTTA
58749 TGTTTGATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTTAAAATATAATATATT
Found at i:64418 original size:13 final size:13
Alignment explanation
Indices: 64397--64428 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
64387 TATAAAAGTA
64397 TTCAATACGCAAG
1 TTCAATACGCAAG
*
64410 TTCAGTACGCAAG
1 TTCAATACGCAAG
64423 TTCAAT
1 TTCAAT
64429 GCGTTTACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (13 bp):
TTCAATACGCAAG
Found at i:72982 original size:18 final size:18
Alignment explanation
Indices: 72950--73001 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
72940 CTGGGATGAG
72950 AATAAATTT--TTAATTA
1 AATAAATTTAATTAATTA
*
72966 AATAAATTTAATTAATTG
1 AATAAATTTAATTAATTA
*
72984 AA-AATTTTAAATTAATTA
1 AATAAATTT-AATTAATTA
73002 CAACTGATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 9 0.30
17 5 0.17
18 16 0.53
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (18 bp):
AATAAATTTAATTAATTA
Found at i:79866 original size:17 final size:17
Alignment explanation
Indices: 79844--79878 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
79834 AAAGTCTCGA
79844 CAACAACATAATTAGCG
1 CAACAACATAATTAGCG
*
79861 CAACAACATGATTAGCG
1 CAACAACATAATTAGCG
79878 C
1 C
79879 GACTCGAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.26, G:0.14, T:0.17
Consensus pattern (17 bp):
CAACAACATAATTAGCG
Found at i:83421 original size:39 final size:39
Alignment explanation
Indices: 83372--83448 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
83362 GCCATATTTC
83372 ATTTGGTTTATCATATAAAAACATATAACATTATATATT
1 ATTTGGTTTATCATATAAAAACATATAACATTATATATT
83411 ATTTGGTTTATCATATAAAAACATATAACATTATATAT
1 ATTTGGTTTATCATATAAAAACATATAACATTATATAT
83449 CATCATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.43
Consensus pattern (39 bp):
ATTTGGTTTATCATATAAAAACATATAACATTATATATT
Done.