genome.fa.s13669.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013669.1 Kokia drynarioides strain JFW-HI SEQ_128697, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79635

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3807--3873	33	2.0	34	85	2	91	32	20	2	43	1.67
7030--7085	18	3.2	18	78	12	71	28	0	5	66	1.14
13596--14025	216	2.0	216	94	0	752	44	13	14	27	1.82
14033--14194	81	2.0	81	100	0	324	48	12	20	18	1.80
16147--16435	30	9.6	30	71	9	160	20	15	23	40	1.90
16227--16435	91	2.3	91	89	1	312	21	16	24	37	1.93
16540--16615	30	2.5	30	84	0	98	21	15	22	40	1.90
21577--21615	17	2.4	17	87	12	55	51	15	17	15	1.77
32360--32405	23	2.0	23	100	0	92	52	13	13	21	1.73
40663--40755	31	3.0	31	98	0	177	35	7	19	37	1.80
42368--42420	24	2.2	24	77	16	56	43	1	1	52	1.23
44314--44384	28	2.5	28	81	6	72	30	0	1	67	0.99
44327--44381	17	3.4	16	76	14	51	27	0	1	70	0.97
45490--45539	25	2.0	25	84	4	64	30	8	12	50	1.68
45530--45588	28	2.1	28	80	0	64	37	5	5	52	1.46
48119--48301	31	6.2	30	73	16	102	57	9	4	28	1.49
48166--48301	32	4.6	31	81	10	128	60	8	2	29	1.37
48233--48275	12	3.4	12	75	12	50	62	4	0	32	1.15
48246--48285	21	1.9	21	85	10	55	67	5	0	27	1.11
48219--48293	26	2.8	27	84	13	109	62	8	0	29	1.23
53451--53826	195	1.9	191	82	3	457	25	24	19	30	1.98
57849--58078	54	4.3	54	87	3	313	29	14	21	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57851--58078	107	2.1	107	90	3	352	28	14	21	34	1.93
58698--58753	21	2.5	23	85	8	71	25	8	26	39	1.85
62824--63149	54	6.1	54	84	1	399	31	15	18	34	1.92
62824--63152	107	3.1	108	84	2	405	31	15	18	34	1.92
62830--63144	161	2.0	159	88	5	465	32	14	18	35	1.91
63997--64025	14	2.1	14	100	0	58	37	6	27	27	1.82
64949--64988	21	1.9	21	100	0	80	15	17	30	37	1.90
68038--68171	43	3.2	43	62	23	102	43	21	6	28	1.78
68035--68200	84	2.0	84	97	0	314	42	20	7	30	1.79
68355--68447	48	1.9	48	88	0	141	40	22	9	26	1.85
70745--70782	19	2.0	19	89	0	58	34	21	2	42	1.67
74202--74253	17	2.8	18	75	19	54	9	13	1	75	1.14
77046--77076	15	2.1	15	93	0	53	29	22	22	25	1.99
79303--79353	26	2.0	26	96	0	93	43	9	17	29	1.81

Tables:   1

The End!