genome.fa.s13672.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013672.1 Kokia drynarioides strain JFW-HI SEQ_128700, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100403

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2500--2524	13	1.9	13	100	0	50	32	24	4	40	1.73
5196--5591	199	2.0	199	93	0	684	34	18	18	28	1.95
21251--21422	23	7.5	23	79	8	154	43	20	23	12	1.86
21251--21388	69	2.0	66	84	10	179	44	21	21	13	1.86
25101--25167	33	2.1	33	94	2	118	20	4	7	67	1.34
25106--25154	11	4.5	11	75	14	57	18	2	8	71	1.21
27404--27456	24	2.2	25	83	6	65	54	0	0	45	0.99
38317--38341	6	4.2	6	100	0	50	68	32	0	0	0.90
40730--40789	31	1.9	31	83	6	77	45	11	11	31	1.77
43657--43690	6	5.7	6	92	0	59	0	38	0	61	0.96
47325--47397	38	1.9	37	91	2	119	34	6	27	31	1.83
48177--48237	16	3.7	16	72	10	52	52	1	3	42	1.27
48199--48237	16	2.3	17	86	8	53	56	2	0	41	1.13
49498--49559	31	2.0	31	84	3	81	50	9	12	27	1.72
75007--75236	115	2.0	115	98	0	442	28	15	25	30	1.96
81153--81178	2	13.0	2	100	0	52	0	50	0	50	1.00
85583--85616	17	2.0	18	88	11	54	52	0	5	41	1.25
85606--85645	9	4.4	9	87	0	53	50	0	2	47	1.14
87139--87170	14	2.3	14	100	0	64	56	0	43	0	0.99
88069--88198	58	2.2	58	82	4	145	40	4	22	33	1.74
88185--88474	30	9.8	29	80	5	280	33	3	27	35	1.75
88208--88475	90	3.0	88	81	8	310	32	3	29	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90240--90338	17	5.8	17	73	8	76	52	6	7	34	1.53
90672--91205	206	2.6	206	85	2	680	21	21	20	37	1.95
91087--91291	86	2.4	86	90	3	340	22	22	18	35	1.96
91173--91575	206	2.0	206	92	2	675	22	23	19	34	1.96
90891--91497	292	2.1	292	90	1	984	22	22	19	36	1.95
91658--91827	39	4.4	39	78	4	155	24	19	31	24	1.98
91658--91827	78	2.2	77	80	4	180	24	19	31	24	1.98
91933--92130	101	2.0	101	85	2	272	31	17	16	34	1.92
92260--92605	145	2.4	139	86	3	442	17	22	19	41	1.90
92625--92832	49	4.2	51	72	10	169	13	23	21	41	1.89
94025--94082	6	10.0	6	73	14	50	0	13	5	81	0.86
94024--94081	18	3.3	18	80	9	66	0	12	5	82	0.82
94017--94079	32	1.9	33	84	9	85	1	12	4	80	0.93
94017--94082	17	4.0	16	81	11	71	1	13	4	80	0.94
99356--99416	28	2.2	28	85	2	79	27	9	29	32	1.89
99489--99743	29	8.6	29	78	9	212	36	1	24	36	1.67

Tables:   1

The End!