Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013675.1 Kokia drynarioides strain JFW-HI SEQ_128703, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4994
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33


Found at i:1170 original size:23 final size:24

Alignment explanation


    Indices: 1134--1183  Score: 59
    Period size: 23  Copynumber: 2.1  Consensus size: 24

       1124 AATTGAAAGT

                               *     
       1134 AAAGTGAAAGTGAAATTG-GAATTG
          1 AAAGTGAAAGTG-AATTGTAAATTG

                   *                
       1158 AAAGTGATA-TGAATTGTAAATTG
          1 AAAGTGAAAGTGAATTGTAAATTG

               
       1181 AAA
          1 AAA

       1184 ATCTCTATTA


Statistics
Matches: 23,  Mismatches: 2, Indels: 3
        0.82            0.07        0.11

Matches are distributed among these distances:
  22    5  0.22
  23   10  0.43
  24    8  0.35

ACGTcount: A:0.48, C:0.00, G:0.24, T:0.28


Consensus pattern (24 bp):   
AAAGTGAAAGTGAATTGTAAATTG
Done.