Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013681.1 Kokia drynarioides strain JFW-HI SEQ_128709, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 793

Length: 1322
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32


Found at i:1166 original size:239 final size:241

Alignment explanation


    Indices: 742--1225  Score: 848
    Period size: 239  Copynumber: 2.0  Consensus size: 241

        732 TATCTAAGTT

                                                                             
        742 TTCCTTTCAAATTAGCCACACACTCGAACTCTCTAACCTACCAAACACAAAAATAATCTCCAATT
          1 TTCCTTTCAAATTAGCCACACACTCGAACTCTCTAACCTA-C--ACACAAAAATAATCTCCAATT

                                           *                       *         
        807 TCAAAGAAAAAACTATGATTTCTCCATCAAATTTTTCATTGTTCTTCTCACGTTCGTCCTTGAAT
         63 TCAAAGAAAAAACTATGATTTCTCCATCAAAATTTTCATTGTTCTTCTCACGTTCATCCTTGAAT

                                                                         *   
        872 TAGATCCATAGTTCGTCATTTTTAACAAATTGACATAACATTTTGACTTTTTATGATCAAATAGT
        128 TAGATCCATAGTTCGTCATTTTTAACAAATTGACATAACATTTTGACTTTTTATGATCAAACAGT

              *                   **                         
        937 GTGTAACACCTCGAAACCTGACTTAGAAGTTTCGATCGGATTTCGGAGG
        193 GTATAACACCTCGAAACCTGACAGAGAAGTTTCGATCGGATTTCGGAGG

                                                                             
        986 TTCCTTTCAAATTAGCCACACACTC-AGACTCTCTAACCT-C-CACAAAAATAATCTCCAATTTC
          1 TTCCTTTCAAATTAGCCACACACTCGA-ACTCTCTAACCTACACACAAAAATAATCTCCAATTTC

                                                                             
       1048 AAAGAAAAAACTATGATTTCTCCATCAAAATTTTCATTGTTCTTCTCACGTTCATCCTTGAATTA
         65 AAAGAAAAAACTATGATTTCTCCATCAAAATTTTCATTGTTCTTCTCACGTTCATCCTTGAATTA

                                           *                                 
       1113 GATCCATAGTTCGTCATTTTTAACAAATTGAGATAACATTTTGACTTTTTATGATCAAACAGTGT
        130 GATCCATAGTTCGTCATTTTTAACAAATTGACATAACATTTTGACTTTTTATGATCAAACAGTGT

                                                           
       1178 ATAACACCTCGAAACCTGACAGAGAAGTTTCGATCGGATTTCGGAGG
        195 ATAACACCTCGAAACCTGACAGAGAAGTTTCGATCGGATTTCGGAGG

             
       1225 T
          1 T

       1226 CACATGGACC


Statistics
Matches: 232,  Mismatches: 7, Indels: 7
        0.94            0.03        0.03

Matches are distributed among these distances:
 239  193  0.83
 242    1  0.00
 243    1  0.00
 244   37  0.16

ACGTcount: A:0.33, C:0.22, G:0.12, T:0.34


Consensus pattern (241 bp):   
TTCCTTTCAAATTAGCCACACACTCGAACTCTCTAACCTACACACAAAAATAATCTCCAATTTCA
AAGAAAAAACTATGATTTCTCCATCAAAATTTTCATTGTTCTTCTCACGTTCATCCTTGAATTAG
ATCCATAGTTCGTCATTTTTAACAAATTGACATAACATTTTGACTTTTTATGATCAAACAGTGTA
TAACACCTCGAAACCTGACAGAGAAGTTTCGATCGGATTTCGGAGG
Done.