genome.fa.s13683.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013683.1 Kokia drynarioides strain JFW-HI SEQ_128711, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41814

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658--696	17	2.3	17	91	8	62	46	5	0	48	1.24
973--1166	97	2.0	97	82	4	239	39	13	15	30	1.87
1509--1934	29	14.5	27	69	20	123	39	2	25	32	1.71
1476--1792	58	5.4	59	80	10	351	39	3	26	30	1.74
1537--1910	29	12.6	30	66	17	133	40	2	25	31	1.69
1509--1910	87	4.6	87	73	18	316	39	2	25	31	1.70
1537--1760	122	1.8	122	88	5	346	40	3	25	30	1.73
1509--1935	58	7.3	59	73	14	210	39	2	25	32	1.71
3068--3143	15	5.0	15	71	19	52	38	6	1	53	1.35
3073--3189	9	12.3	9	69	20	53	39	4	2	53	1.34
3124--3161	12	3.2	12	92	0	58	36	2	2	57	1.26
7874--7948	28	2.8	25	79	13	78	49	18	5	26	1.69
9180--9499	30	10.8	29	78	11	285	34	2	27	35	1.72
9144--9440	60	5.0	57	77	11	201	33	2	29	34	1.71
9073--9499	89	4.8	89	77	9	347	33	3	28	34	1.74
11445--11470	13	2.0	13	100	0	52	23	7	23	46	1.78
18434--18841	30	13.7	30	80	6	375	33	3	27	35	1.74
18288--18840	59	9.4	59	76	7	444	33	3	28	33	1.76
18298--18840	119	4.6	118	78	8	439	33	4	28	34	1.76
20807--20864	6	10.0	6	76	14	59	53	1	1	43	1.21
20807--20864	17	3.4	17	83	9	73	53	1	1	43	1.21
20937--21211	117	2.5	110	81	7	329	32	22	9	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21276--21412	68	2.0	68	100	0	274	33	16	17	32	1.92
22723--22797	37	2.0	37	100	0	150	29	24	13	33	1.93
23127--23455	163	2.0	163	96	0	613	28	13	19	38	1.90
24020--24063	20	2.2	20	83	0	52	31	9	40	18	1.81
24192--24232	18	2.3	18	84	16	50	34	0	4	60	1.18
24283--24355	17	4.3	17	84	6	94	36	10	0	52	1.37
24284--24396	23	5.0	22	78	11	90	38	11	0	49	1.45
24291--24363	17	4.2	17	82	8	58	38	10	1	49	1.47
24289--24478	6	31.7	6	74	12	104	41	6	1	50	1.36
24406--24553	6	23.3	6	72	11	73	39	5	0	55	1.23
24360--24505	59	2.3	65	77	17	153	42	5	0	51	1.30
24472--24518	16	3.0	16	84	9	53	36	8	0	55	1.31
24465--24531	15	4.8	13	77	16	64	38	5	0	55	1.25
24779--24841	31	2.0	31	93	0	108	34	3	9	52	1.50
27865--28085	114	1.9	114	86	1	309	30	10	24	34	1.89
27865--28103	115	2.1	115	81	3	277	31	11	22	34	1.90
36180--36282	50	2.1	50	96	0	188	20	23	5	50	1.69
38689--38719	2	15.5	2	93	0	53	48	0	0	51	1.00
39265--39339	27	2.8	27	86	6	100	49	13	12	25	1.76
40465--40713	29	8.6	28	72	15	161	34	3	26	35	1.73
40465--40713	58	4.3	57	82	8	263	34	3	26	35	1.73
40440--40708	117	2.3	116	78	9	264	34	4	26	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40469--40733	87	3.0	87	75	9	261	35	4	26	34	1.76
41747--41806	3	20.0	3	74	6	50	38	0	3	58	1.15

Tables:   1

The End!