Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013686.1 Kokia drynarioides strain JFW-HI SEQ_128714, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8085
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.32

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1492 original size:130 final size:130

Alignment explanation


    Indices: 1259--1502  Score: 425
    Period size: 130  Copynumber: 1.9  Consensus size: 130

       1249 GATTTGCGAA

                                                                             
       1259 AGAGTCCAAGTTGCAAAACAAAATGAATAAATCCGATGATGTTTGGTAAATGGTTGAGGTGGTCT
          1 AGAGTCCAAGTTGCAAAACAAAATGAATAAATCCGATGATGTTTGGTAAATGGTTGAGGTGGTCT

             *       *                       *                               
       1324 TGCATGTAATGTTCTGCCATGTAAACTGACATCGCCGTTAATCTAAACACGGATTTGTGAAATAG
         66 TCCATGTAACGTTCTGCCATGTAAACTGACATCACCGTTAATCTAAACACGGATTTGTGAAATAG

                   *                                                     *   
       1389 AGAGTCCTAGTTGCAAAACAAAATGAATAAATCCGATGATGTTTGGTAAATGGTTGAGGTGTTCT
          1 AGAGTCCAAGTTGCAAAACAAAATGAATAAATCCGATGATGTTTGGTAAATGGTTGAGGTGGTCT

                   *                                *        
       1454 TCCATGTTACGTTCTGCCATGTAAACTGACATCACCGTTATTCTAAACA
         66 TCCATGTAACGTTCTGCCATGTAAACTGACATCACCGTTAATCTAAACA

       1503 TGTTAAGATA


Statistics
Matches: 107,  Mismatches: 7, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
 130  107  1.00

ACGTcount: A:0.32, C:0.16, G:0.21, T:0.30


Consensus pattern (130 bp):   
AGAGTCCAAGTTGCAAAACAAAATGAATAAATCCGATGATGTTTGGTAAATGGTTGAGGTGGTCT
TCCATGTAACGTTCTGCCATGTAAACTGACATCACCGTTAATCTAAACACGGATTTGTGAAATAG

Found at i:2372 original size:17 final size:16

Alignment explanation


    Indices: 2346--2377  Score: 55
    Period size: 17  Copynumber: 1.9  Consensus size: 16

       2336 GTAAAAATTA

                            
       2346 AGAAAAAATTTAATGC
          1 AGAAAAAATTTAATGC

                            
       2362 AGAAGAAAATTTAATG
          1 AGAA-AAAATTTAATG

       2378 GACTTCATTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    4  0.27
  17   11  0.73

ACGTcount: A:0.56, C:0.03, G:0.16, T:0.25


Consensus pattern (16 bp):   
AGAAAAAATTTAATGC
Done.