genome.fa.s13689.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013689.1 Kokia drynarioides strain JFW-HI SEQ_128717, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  221939

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49--156	54	2.0	54	100	0	216	42	18	12	25	1.86
928--972	6	7.5	6	84	0	54	44	0	31	24	1.54
924--972	18	2.7	18	80	0	62	46	0	28	24	1.53
3481--3612	52	2.5	53	92	2	214	36	23	14	25	1.93
10470--10569	23	4.3	23	81	7	121	41	21	27	11	1.86
13510--13549	13	3.1	12	80	19	53	70	0	2	27	1.01
13510--13602	27	3.3	27	75	18	82	66	1	1	31	1.05
13562--13763	99	2.1	95	83	8	246	50	3	2	43	1.34
13792--13816	7	3.6	7	100	0	50	56	0	0	44	0.99
19675--19840	63	2.6	63	82	3	192	33	12	12	42	1.79
40022--40052	14	2.2	14	94	0	53	12	25	6	54	1.62
44018--44115	45	2.2	45	92	3	162	55	5	14	25	1.60
47218--47247	9	3.3	9	95	0	51	53	10	3	33	1.51
47326--47377	20	2.7	19	79	5	59	55	5	0	38	1.24
52980--53013	2	17.0	2	87	0	50	47	2	2	47	1.32
54367--54399	3	11.0	3	93	0	57	30	0	0	69	0.88
65537--65577	20	2.0	20	90	0	64	12	7	17	63	1.50
65560--65629	36	1.9	36	82	0	86	15	5	17	61	1.52
69193--69269	24	3.4	23	70	26	65	36	5	20	37	1.75
69187--69283	44	2.2	44	88	0	140	34	4	22	39	1.73
74603--74638	11	3.2	11	92	4	54	25	5	0	69	1.10
77238--77282	23	2.0	22	86	4	63	31	4	0	64	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77252--77334	20	4.3	20	73	18	70	44	0	0	55	0.99
84846--84886	22	1.9	22	90	5	66	73	2	9	14	1.19
103259--103355	10	10.0	10	74	13	78	32	0	3	63	1.10
103259--103361	38	2.7	40	80	10	117	32	0	3	64	1.12
103289--103355	21	3.4	21	80	12	79	32	0	2	64	1.09
117378--117442	23	2.7	23	79	11	67	20	4	3	72	1.16
124430--124462	16	2.0	17	88	5	50	60	0	6	33	1.21
124401--124455	26	2.1	26	83	6	67	60	0	7	32	1.24
125389--125549	59	2.7	59	78	8	166	50	10	14	23	1.74
129442--129467	12	2.2	12	100	0	52	61	7	0	30	1.24
130129--130169	21	1.9	22	85	14	59	58	2	2	36	1.24
130107--130183	19	4.0	21	74	25	57	64	2	1	31	1.15
130277--130355	10	8.5	10	77	17	73	67	0	2	30	1.04
130212--130355	47	3.1	46	80	9	143	63	1	4	30	1.24
130615--130640	11	2.4	11	100	0	52	92	0	0	7	0.39
130677--130719	21	2.1	20	91	4	68	30	2	0	67	1.03
130677--130719	10	4.3	10	80	8	52	30	2	0	67	1.03
130725--130779	26	2.2	26	80	9	60	32	3	1	61	1.24
136749--136831	39	2.2	38	79	12	93	48	2	6	43	1.40
137546--137595	25	2.0	26	96	4	93	34	2	0	64	1.05
138514--138560	23	2.0	23	95	0	85	46	19	8	25	1.77
140231--140329	17	5.9	17	78	2	85	37	4	6	52	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140228--140336	6	19.2	6	71	13	52	39	4	5	50	1.46
140293--140336	22	2.0	23	90	4	72	43	2	0	54	1.12
140976--141031	18	3.1	19	75	17	55	58	3	0	37	1.15
141003--141086	22	3.8	22	75	15	75	58	3	4	33	1.36
142229--142325	30	3.3	29	81	11	99	29	18	2	49	1.59
142145--142425	29	9.5	30	67	14	147	32	22	2	43	1.66
142145--142496	59	5.9	59	82	3	329	32	22	3	42	1.69
142362--142511	29	5.1	29	69	7	99	32	22	4	42	1.72
147152--147181	15	2.0	15	100	0	60	20	26	13	40	1.89
152103--152152	21	2.3	21	82	3	64	38	14	16	32	1.88
153806--154351	49	11.2	49	71	7	367	38	19	25	17	1.93
153789--154364	97	5.9	97	83	2	667	38	19	25	17	1.93
153789--154356	196	2.9	194	82	4	687	38	19	24	17	1.93
155010--155051	17	2.6	16	88	7	66	35	4	4	54	1.42
155815--155865	22	2.3	23	86	3	68	58	5	3	31	1.40
155791--155871	35	2.3	35	79	10	94	59	4	4	30	1.40
156521--156557	15	2.5	15	90	0	56	21	43	21	13	1.87
156941--157041	30	3.4	30	76	10	100	33	23	0	42	1.55
156941--157042	29	3.4	29	75	10	107	33	23	0	43	1.54
157052--157146	29	3.2	28	70	22	79	31	27	1	40	1.63
157055--157242	61	3.2	61	77	9	174	29	26	3	40	1.71
157055--157326	120	2.3	120	78	7	268	29	26	4	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158791--158831	2	20.5	2	94	0	73	48	48	2	0	1.14
158996--159048	21	2.5	22	88	11	76	35	26	13	24	1.92
162522--162621	27	3.5	28	89	8	148	50	2	1	47	1.19
162522--162629	56	1.9	56	85	7	148	49	1	1	47	1.23
162955--163063	42	2.6	42	86	2	139	21	16	20	42	1.89
163838--163883	20	2.3	20	92	0	74	50	13	6	30	1.66
163984--164037	16	3.3	16	74	5	63	51	0	0	48	1.00
163968--164043	33	2.3	33	95	2	136	47	0	0	52	1.00
163993--164043	9	6.0	9	73	13	54	47	0	0	52	1.00
164002--164047	24	1.9	24	86	8	67	52	0	0	47	1.00
182466--182696	113	2.0	113	88	0	345	44	8	17	29	1.78
185168--185227	29	2.0	30	80	3	68	51	0	5	43	1.23
185388--185425	10	3.7	10	80	19	51	55	5	0	39	1.23
185390--185432	21	2.0	21	90	0	68	48	9	0	41	1.35
188748--188797	19	2.6	21	75	18	63	48	2	0	50	1.12
189185--189251	32	2.1	33	85	2	91	7	2	52	37	1.45
192954--193081	44	2.8	44	83	4	148	28	21	10	39	1.86
193392--193556	44	3.8	44	90	0	240	27	19	10	42	1.84
194323--194366	23	2.0	23	90	4	72	43	6	11	38	1.67
199461--199499	19	2.0	20	85	5	53	28	0	5	66	1.12
199520--199554	17	2.0	17	88	5	52	57	2	2	37	1.29
199570--199611	20	2.0	21	86	13	61	57	2	0	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205105--205137	17	1.9	17	88	11	50	45	33	0	21	1.52
206248--206291	22	2.0	22	100	0	88	31	13	22	31	1.93
221636--221698	22	2.8	22	82	2	90	53	0	0	46	1.00
221636--221725	45	2.0	46	84	6	121	52	0	0	47	1.00
221672--221740	31	2.3	30	90	7	104	43	0	0	56	0.99
221672--221753	28	2.8	30	83	10	91	43	0	0	56	0.99

Tables:   1

The End!