Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013693.1 Kokia drynarioides strain JFW-HI SEQ_128721, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2911
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35


Found at i:2010 original size:24 final size:23

Alignment explanation


    Indices: 1979--2033  Score: 69
    Period size: 22  Copynumber: 2.4  Consensus size: 23

       1969 CTTCCTTATT

                                    
       1979 TTTTATTTTTTTAATTATATTTTC
          1 TTTTATTTTTTTAATTAT-TTTTC

                            *      
       2003 TTTTA--TTTTTAATTCTTTTTC
          1 TTTTATTTTTTTAATTATTTTTC

              *       
       2024 TTCTATTTTT
          1 TTTTATTTTT

       2034 CCTTAGATCG


Statistics
Matches: 27,  Mismatches: 2, Indels: 5
        0.79            0.06        0.15

Matches are distributed among these distances:
  21    9  0.33
  22   10  0.37
  23    3  0.11
  24    5  0.19

ACGTcount: A:0.16, C:0.07, G:0.00, T:0.76


Consensus pattern (23 bp):   
TTTTATTTTTTTAATTATTTTTC

Found at i:2022 original size:21 final size:22

Alignment explanation


    Indices: 1986--2033  Score: 71
    Period size: 21  Copynumber: 2.2  Consensus size: 22

       1976 ATTTTTTATT

                               *  
       1986 TTTTTAATTATATTTTCTTTTA
          1 TTTTTAATTATATTTTCTTCTA

                     *            
       2008 TTTTTAATTCT-TTTTCTTCTA
          1 TTTTTAATTATATTTTCTTCTA

                 
       2029 TTTTT
          1 TTTTT

       2034 CCTTAGATCG


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  21   14  0.58
  22   10  0.42

ACGTcount: A:0.17, C:0.08, G:0.00, T:0.75


Consensus pattern (22 bp):   
TTTTTAATTATATTTTCTTCTA
Done.