genome.fa.s13698.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013698.1 Kokia drynarioides strain JFW-HI SEQ_128726, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  206427

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3984--4251	29	9.1	28	76	9	196	33	25	4	36	1.77
4039--4251	59	3.6	59	76	6	175	32	24	5	36	1.79
3984--4251	88	3.0	87	76	8	256	33	25	4	36	1.77
15614--15657	3	15.0	3	95	4	81	31	0	0	68	0.90
16625--16661	17	2.2	18	85	9	51	56	0	21	21	1.42
16612--16661	22	2.3	22	79	6	57	56	2	20	22	1.53
20053--20080	6	4.7	6	100	0	56	50	50	0	0	1.00
25178--25207	7	4.3	7	100	0	60	30	0	13	56	1.37
31742--31895	37	4.2	37	94	0	263	53	6	19	20	1.66
34660--34697	17	2.2	17	86	9	51	50	7	0	42	1.31
35777--35802	13	2.0	13	100	0	52	30	0	0	69	0.89
36565--36596	2	16.0	2	100	0	64	50	0	0	50	1.00
54188--54245	29	2.0	29	86	0	80	46	1	5	46	1.35
65213--65241	11	2.7	11	94	5	51	62	6	0	31	1.22
66456--66507	24	2.2	24	85	0	68	55	7	3	32	1.46
69905--69943	19	2.1	18	85	4	51	48	7	5	38	1.54
70638--70690	21	2.5	21	88	11	74	32	26	13	28	1.93
76240--76266	6	4.5	6	100	0	54	85	0	14	0	0.61
76539--76601	32	2.0	32	93	0	108	39	20	17	22	1.92
78237--78294	13	4.6	12	77	10	53	70	1	1	25	1.06
79035--79115	23	3.5	23	83	5	92	39	14	11	34	1.82
79053--79121	24	2.9	24	82	2	95	42	15	11	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79212--79259	24	2.0	24	91	0	78	47	18	14	18	1.82
92413--92458	22	2.1	22	100	0	92	45	19	13	21	1.84
112860--112907	5	9.2	5	95	4	78	81	0	18	0	0.70
112851--112910	5	10.7	6	92	7	76	80	0	20	0	0.72
113393--113466	26	2.8	26	81	4	78	24	18	28	28	1.98
117503--117585	24	3.5	24	86	0	121	50	9	13	26	1.72
125701--125742	17	2.4	18	92	4	68	64	0	2	33	1.07
126611--126683	30	2.5	30	90	2	121	36	19	4	39	1.71
126611--126761	29	5.2	30	76	10	143	35	22	5	37	1.77
126632--126761	58	2.2	59	81	9	167	33	23	5	37	1.77
131821--131874	23	2.4	23	82	14	69	79	0	11	9	0.93
132788--133000	99	2.2	99	81	6	245	36	15	31	16	1.90
132864--133022	49	3.2	49	77	7	151	35	18	28	16	1.93
132821--133030	99	2.1	99	79	3	226	37	16	28	18	1.92
133033--133397	46	7.9	46	82	2	426	35	23	17	23	1.95
133043--133391	91	3.8	92	86	2	459	35	23	17	23	1.95
133457--134257	207	3.8	208	86	2	1045	37	16	22	23	1.94
133893--134050	85	1.9	85	85	2	219	38	17	24	19	1.93
135108--135147	11	3.9	10	87	12	55	67	0	2	30	1.04
136036--136208	29	5.8	31	74	13	109	35	23	4	36	1.75
136059--136143	30	2.9	31	79	20	110	37	23	2	36	1.68
156706--156801	41	2.3	41	96	0	174	36	28	6	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156791--156829	17	2.3	17	86	0	51	46	23	12	17	1.83
164442--164482	23	1.9	20	85	14	55	46	14	19	19	1.84
165545--165813	135	2.0	135	92	1	450	30	17	19	31	1.95
169722--169776	17	3.2	17	76	5	56	54	12	10	21	1.68
169733--169776	18	2.5	18	81	3	54	54	13	11	20	1.69
172060--172102	21	2.0	21	86	8	61	72	2	9	16	1.21
189232--189304	5	14.2	5	74	5	65	36	19	5	38	1.75
189200--189288	44	2.1	42	85	4	115	39	16	5	38	1.73
196858--196888	13	2.4	13	100	0	62	25	16	6	51	1.68
196927--197027	50	2.0	50	98	0	193	30	17	18	32	1.95
203721--203787	25	2.7	25	78	0	80	34	20	23	20	1.97

Tables:   1

The End!