Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000137.1 Kokia drynarioides strain JFW-HI SEQ_110789, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4708
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32


Found at i:2398 original size:20 final size:20

Alignment explanation


    Indices: 2352--2454  Score: 75
    Period size: 20  Copynumber: 5.0  Consensus size: 20

       2342 TGTTTGAAAC

                            *     
       2352 AATTTTAAAATCAAGTTAAAAT
          1 AATTTT-AAA-CAAGTCAAAAT

            *          *        
       2374 GATTTTAAACATGTCAAAAT
          1 AATTTTAAACAAGTCAAAAT

                  *              
       2394 AA-TTTGAACTAAGTCAAAAT
          1 AATTTTAAAC-AAGTCAAAAT

            *          **       
       2414 CATTTT-AACACTTCAAAAT
          1 AATTTTAAACAAGTCAAAAT

            **                   
       2433 GTTTTTCAAACAAGTCAAAAT
          1 AATTTT-AAACAAGTCAAAAT

             
       2454 A
          1 A

       2455 GCTCTAGGCC


Statistics
Matches: 63,  Mismatches: 14, Indels: 9
        0.73            0.16        0.10

Matches are distributed among these distances:
  19   18  0.29
  20   23  0.37
  21   17  0.27
  22    5  0.08

ACGTcount: A:0.48, C:0.12, G:0.07, T:0.34


Consensus pattern (20 bp):   
AATTTTAAACAAGTCAAAAT
Done.