Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013700.1 Kokia drynarioides strain JFW-HI SEQ_128728, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2635
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.26

Warning! 413 characters in sequence are not A, C, G, or T


Found at i:1400 original size:3 final size:3

Alignment explanation


    Indices: 1392--1439  Score: 60
    Period size: 3  Copynumber: 16.0  Consensus size: 3

       1382 TAAGTTTAAC

                                    *                 *  *           *     
       1392 AAT AAT AAT AAT AAT AAT GAT AAT AAT AAT AAC AGT AAT AAT ATT AAT
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT

       1440 CATTAAACCA


Statistics
Matches: 37,  Mismatches: 8, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
   3   37  1.00

ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33


Consensus pattern (3 bp):   
AAT

Done.