genome.fa.s13712.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013712.1 Kokia drynarioides strain JFW-HI SEQ_128740, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  240913

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2168--2200	16	2.1	16	94	0	57	51	27	0	21	1.48
2232--2266	18	1.9	18	88	11	54	62	2	0	34	1.10
3439--3463	7	3.6	7	100	0	50	0	16	0	84	0.63
6298--6562	138	1.9	134	80	6	300	28	16	15	40	1.89
8463--8513	19	2.6	19	84	9	59	52	7	1	37	1.42
8520--8586	19	3.6	18	76	13	64	67	5	1	25	1.22
8518--8590	20	3.7	19	78	5	65	65	5	1	27	1.22
19025--19259	51	4.6	51	85	2	283	32	24	13	29	1.93
23349--23374	6	4.3	6	100	0	52	69	15	15	0	1.20
23847--23886	17	2.3	18	80	20	50	42	0	5	52	1.23
25925--25990	32	2.1	32	88	5	98	57	0	24	18	1.40
35046--35087	22	2.0	22	85	4	59	50	0	4	45	1.23
35657--35733	18	4.2	18	73	14	59	33	2	2	61	1.24
40564--40603	19	2.2	19	86	4	55	27	2	10	60	1.42
41639--41744	21	4.9	21	73	13	90	71	18	4	4	1.21
41639--41732	46	2.0	47	85	4	129	73	17	4	5	1.18
46795--47034	29	8.3	28	76	11	184	36	25	3	35	1.72
46874--47025	59	2.6	58	86	8	218	32	22	4	40	1.74
46795--47031	88	2.7	87	78	9	232	35	25	3	35	1.73
46994--47060	30	2.3	28	80	12	73	32	32	1	32	1.67
46805--47059	59	4.4	60	78	10	201	35	25	3	36	1.73
47894--47918	10	2.5	10	100	0	50	28	0	8	64	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57166--57190	2	12.5	2	100	0	50	52	0	0	48	1.00
64656--64697	22	2.0	21	86	13	61	28	0	11	59	1.33
67278--67321	22	2.0	23	86	13	65	72	2	22	2	1.07
93144--93177	17	2.1	17	88	5	52	61	14	5	17	1.52
93944--94025	9	8.3	9	74	16	65	32	0	4	62	1.17
93950--94034	18	4.2	19	75	20	75	31	0	4	63	1.15
93955--94001	24	2.0	24	86	0	67	40	0	2	57	1.11
93983--94036	19	2.8	18	88	11	72	31	0	7	61	1.24
111764--111834	35	2.0	35	100	0	142	56	0	5	38	1.23
112408--112441	11	2.9	12	86	8	52	82	2	5	8	0.93
116171--116200	6	5.0	6	91	0	51	20	33	13	33	1.91
128322--128367	24	2.0	23	83	12	58	13	23	2	60	1.43
135882--135975	41	2.3	42	83	1	118	23	28	27	20	1.99
137651--137698	21	2.3	21	85	7	62	35	22	14	27	1.93
139508--139563	20	2.7	21	78	15	55	41	10	0	48	1.38
140986--141038	26	2.0	26	92	0	88	60	11	0	28	1.31
144347--144410	23	2.7	23	82	2	83	40	15	10	32	1.82
144494--144542	12	4.2	12	81	2	64	46	12	18	22	1.82
146212--146274	30	2.1	31	88	8	94	47	0	4	47	1.23
146608--146652	16	2.7	16	81	18	56	31	0	2	66	1.04
146601--146647	25	1.9	24	86	4	67	25	0	4	70	1.05
147851--147915	30	2.2	30	100	0	130	49	13	3	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147871--147921	15	3.3	16	70	8	52	52	11	1	33	1.49
151060--151115	23	2.4	24	76	11	62	33	0	3	62	1.12
154131--154169	20	2.0	20	85	10	53	35	10	7	46	1.67
168892--168933	21	2.0	20	82	13	50	23	21	21	33	1.97
170002--170598	324	1.8	324	84	3	806	32	17	15	34	1.91
180640--180719	39	2.1	39	100	0	160	37	15	22	25	1.93
181489--181904	212	2.0	208	82	2	501	36	16	23	23	1.94
184009--184107	29	3.4	28	72	13	83	28	24	7	40	1.81
183995--184077	30	2.8	30	78	12	82	31	22	6	39	1.78
185379--185435	26	2.1	29	81	15	68	40	0	12	47	1.41
187486--187554	31	2.2	32	84	7	97	37	18	8	34	1.82
188194--188233	18	2.3	19	83	16	59	70	0	15	15	1.18
189804--189846	20	2.2	20	83	8	52	30	0	11	58	1.34
194953--194990	19	2.0	19	89	0	58	42	2	0	55	1.14
195821--195874	20	2.7	20	91	0	81	29	37	7	25	1.83
197224--197415	96	2.0	96	80	8	212	34	11	22	30	1.91
197660--197964	29	10.7	28	71	19	195	31	3	30	33	1.76
197641--197835	59	3.3	59	89	2	293	32	5	29	33	1.79
197812--197856	21	2.1	21	95	0	81	22	2	35	40	1.66
197755--197915	80	2.0	80	91	0	259	28	4	32	34	1.77
197695--197960	139	1.9	139	91	0	433	30	4	30	34	1.77
197833--197964	59	2.2	59	93	0	219	28	3	33	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199116--199140	7	3.6	7	100	0	50	56	0	0	44	0.99
199759--199813	15	3.7	15	79	18	69	20	14	27	38	1.91
199845--199923	17	4.8	16	84	4	95	51	2	0	45	1.14
199845--199923	34	2.4	33	86	2	113	51	2	0	45	1.14
199845--199912	6	11.8	6	72	20	56	52	1	0	45	1.09
202068--202120	20	2.7	20	90	0	79	28	32	9	30	1.88
203690--203852	29	5.6	28	74	10	96	33	3	28	35	1.73
203690--203806	27	4.0	29	79	10	114	29	1	31	36	1.68
203837--204093	90	2.9	88	80	7	279	37	3	24	34	1.72
203825--204093	30	9.0	30	74	9	192	37	2	24	34	1.71
203672--204093	60	7.1	60	72	13	252	35	3	26	34	1.74
205749--205774	7	3.7	7	100	0	52	42	0	0	57	0.98
208213--208278	27	2.5	26	80	11	71	36	9	3	51	1.49
208395--208430	18	2.1	18	94	5	65	47	0	11	41	1.39
208673--208722	10	4.9	10	80	4	55	60	2	2	36	1.20
229736--229791	29	1.9	29	81	0	67	26	23	8	41	1.84
230804--230856	27	1.9	28	92	3	90	18	7	47	26	1.75
231641--231682	22	1.9	22	90	0	66	50	0	7	42	1.30

Tables:   1

The End!