Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013713.1 Kokia drynarioides strain JFW-HI SEQ_128741, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7225
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33


Found at i:2317 original size:21 final size:21

Alignment explanation


    Indices: 2262--2318  Score: 69
    Period size: 21  Copynumber: 2.7  Consensus size: 21

       2252 CTTGGAGTTT

                                *
       2262 GTTCTACCGATAGAAGTCTTG
          1 GTTCTACCGATAGAAGTCTTA

               *  *  *    *      
       2283 GTTGTATCGGTAGATGTCTTA
          1 GTTCTACCGATAGAAGTCTTA

                           
       2304 GTTCTACCGATAGAA
          1 GTTCTACCGATAGAA

       2319 TTCTGAAGCT


Statistics
Matches: 27,  Mismatches: 9, Indels: 0
        0.75            0.25        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35


Consensus pattern (21 bp):   
GTTCTACCGATAGAAGTCTTA
Done.