genome.fa.s13714.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013714.1 Kokia drynarioides strain JFW-HI SEQ_128742, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54357

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1363--1424	32	2.0	31	81	15	74	43	11	4	40	1.62
3106--3153	17	2.8	17	84	6	53	47	0	6	45	1.27
3119--3159	21	1.9	22	85	5	57	43	0	4	51	1.23
3173--3211	18	2.3	18	86	8	55	43	2	23	30	1.67
4613--4661	21	2.3	21	79	6	55	28	22	14	34	1.93
8076--8136	23	2.5	23	84	12	70	18	24	19	37	1.94
14451--14543	23	4.0	23	79	6	80	19	26	18	35	1.95
30361--30533	23	7.4	23	80	8	165	12	22	20	43	1.86
30361--30536	69	2.5	68	82	9	187	12	22	20	44	1.84
32216--32246	16	1.9	16	93	0	53	29	0	12	58	1.35
34134--34162	3	9.7	3	100	0	58	0	0	31	68	0.89
37926--38164	29	8.1	29	72	13	139	32	2	29	35	1.71
38166--38339	30	5.9	30	83	6	194	29	2	31	36	1.70
38165--38339	59	3.0	59	81	9	214	29	2	31	36	1.70
38032--38300	135	2.0	136	84	7	361	29	2	30	37	1.71
39347--39406	9	6.6	9	71	9	50	45	1	3	50	1.28
40111--40206	17	5.5	17	74	2	84	54	7	3	35	1.44
40114--40206	34	2.7	34	77	1	105	54	7	3	34	1.45
40785--40904	59	2.0	59	100	0	240	20	26	18	34	1.96
40589--41097	253	2.0	256	84	4	677	22	24	17	35	1.95
41918--42024	42	2.5	43	84	3	126	14	26	18	40	1.90
52301--52492	96	2.0	96	83	9	241	36	14	19	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52759--52927	29	5.8	29	77	10	134	34	4	27	33	1.78
52730--53321	59	10.2	58	76	13	413	32	3	29	34	1.75
52818--52948	30	4.4	29	82	6	140	32	3	28	35	1.75
52813--52948	29	4.6	30	78	9	129	30	3	29	36	1.75
52980--53321	30	11.6	30	82	9	332	32	3	29	34	1.74
52982--53298	89	3.6	86	81	9	336	32	2	29	35	1.72

Tables:   1

The End!