Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013721.1 Kokia drynarioides strain JFW-HI SEQ_128749, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4488
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33


Found at i:2024 original size:16 final size:17

Alignment explanation


    Indices: 1985--2025  Score: 50
    Period size: 16  Copynumber: 2.4  Consensus size: 17

       1975 ATGCAACTAC

                              
       1985 AATAAAGATGCTAGGATA
          1 AATAAA-ATGCTAGGATA

                              
       2003 AATAAAATG-TAGAGAT-
          1 AATAAAATGCTAG-GATA

                   
       2019 AATAAAA
          1 AATAAAA

       2026 ATGCAATGAC


Statistics
Matches: 22,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  16   10  0.45
  17    6  0.27
  18    6  0.27

ACGTcount: A:0.59, C:0.02, G:0.17, T:0.22


Consensus pattern (17 bp):   
AATAAAATGCTAGGATA
Done.