genome.fa.s13729.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013729.1 Kokia drynarioides strain JFW-HI SEQ_128757, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97013

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287--533	30	8.3	30	78	4	187	37	3	24	34	1.73
300--497	59	3.3	59	81	3	191	39	2	23	34	1.68
359--532	90	2.0	88	82	4	215	39	4	23	32	1.73
2421--2455	17	2.1	17	94	0	61	57	2	0	40	1.14
2877--3000	47	2.6	48	85	1	160	36	22	11	29	1.89
6848--6886	13	2.9	13	80	3	51	38	0	7	53	1.30
7029--7070	21	2.0	22	81	13	52	47	0	2	50	1.14
7098--7155	17	3.6	17	75	11	59	55	1	3	39	1.27
16919--17186	84	3.3	80	76	15	285	32	10	11	45	1.74
21028--21113	28	3.1	27	79	3	100	48	16	13	20	1.80
21303--21478	43	4.1	43	78	8	171	36	20	8	34	1.83
28925--28989	34	1.9	34	84	3	87	15	33	21	29	1.94
33052--33126	37	2.0	37	97	0	141	38	16	17	28	1.91
33565--33606	19	2.2	20	91	4	68	21	9	26	42	1.83
34214--34275	30	2.1	30	87	6	90	24	20	30	24	1.99
34858--34905	21	2.3	21	88	0	69	25	10	22	41	1.85
34874--34913	21	1.9	21	89	0	62	27	15	22	35	1.94
35177--35235	29	2.0	29	90	6	93	25	28	20	25	1.99
37323--38139	82	10.0	81	80	7	666	46	12	10	29	1.76
39504--39571	29	2.3	29	84	0	91	33	5	26	33	1.81
39554--39685	29	4.5	28	74	14	115	31	4	28	35	1.77
39552--39685	30	4.6	30	76	15	104	31	5	28	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39552--39685	58	2.3	58	78	11	141	31	5	28	35	1.79
39583--39804	30	7.5	28	74	13	96	34	5	25	34	1.80
39671--39804	30	4.5	31	78	10	129	37	5	23	33	1.79
39711--39835	30	4.1	31	80	8	114	32	4	24	38	1.76
41620--41652	17	1.9	17	93	0	57	54	3	3	39	1.31
42223--42602	49	7.7	49	73	8	250	18	32	14	33	1.91
42124--42715	99	6.0	99	77	5	518	18	31	15	34	1.92
42169--42730	198	2.8	197	79	4	580	17	31	16	34	1.92
46529--46584	29	1.9	28	85	7	76	33	7	28	30	1.84
46561--46857	30	10.1	29	75	12	175	32	7	24	35	1.83
46578--46857	58	4.8	59	77	9	227	33	7	23	35	1.84
46551--46857	88	3.5	86	79	11	261	32	7	24	35	1.83
48597--48652	17	3.4	17	90	2	87	55	1	1	41	1.21
49147--49207	32	1.9	32	86	6	88	52	8	8	31	1.60
50370--50395	9	2.9	9	100	0	52	57	7	11	23	1.59
51682--51734	22	2.5	21	77	20	56	15	3	3	77	1.06
53661--53705	19	2.4	19	81	7	56	37	0	4	57	1.19
54522--54562	21	2.0	21	90	0	64	17	9	2	70	1.25
56105--56154	21	2.4	21	82	0	55	46	14	10	30	1.77
59985--60040	8	6.8	8	80	8	58	19	3	0	76	0.93
61583--61627	19	2.4	19	81	7	56	37	0	4	57	1.19
62430--62488	21	2.8	21	82	17	61	15	10	1	72	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63504--63543	20	2.0	20	100	0	80	40	10	10	40	1.72
65275--65313	19	2.0	19	85	14	53	58	10	5	25	1.51
65560--65718	9	17.6	9	68	19	73	30	2	2	64	1.20
65552--65723	19	9.5	19	67	18	82	32	2	2	62	1.20
65552--65684	38	3.6	38	82	10	159	32	2	1	63	1.15
65731--65924	90	2.2	87	87	4	271	32	8	21	38	1.83
65731--65950	90	2.5	89	83	6	241	33	8	20	37	1.83
72066--72114	20	2.5	20	83	6	55	34	2	10	53	1.47
73432--73490	16	4.1	14	73	18	50	44	23	6	25	1.78
73503--73571	29	2.4	28	85	4	75	42	21	8	27	1.82
74550--74603	23	2.3	23	84	6	65	68	1	7	22	1.24
74550--74604	22	2.5	23	77	16	62	67	1	7	23	1.26
74711--74761	25	2.0	25	81	11	59	70	3	0	25	1.04
74830--74897	30	2.3	29	80	12	77	64	7	7	20	1.43
76036--76068	15	2.1	16	88	11	50	3	0	30	66	1.06
79788--80240	195	2.3	196	81	5	502	28	19	26	25	1.99
86393--86461	32	2.2	32	89	5	104	49	18	2	28	1.62
90067--90100	15	2.4	14	90	9	52	44	26	0	29	1.55
90088--90138	25	2.0	25	100	0	102	47	17	11	23	1.81
93267--93300	3	11.3	3	93	0	50	61	0	5	32	1.20
93258--93301	12	3.7	12	84	6	54	59	0	9	31	1.29

Tables:   1

The End!