Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001373.1 Kokia drynarioides strain JFW-HI SEQ_112840, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 718

Length: 1198
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40


Found at i:302 original size:25 final size:25

Alignment explanation


    Indices: 281--332  Score: 86
    Period size: 25  Copynumber: 2.1  Consensus size: 25

        271 TAGTTAAATG

                          *          
        281 TTGTTTTTAGTTGCCCACTTAAACT
          1 TTGTTTTTAGTTGCACACTTAAACT

                        *            
        306 TTGTTTTTAGTTTCACACTTAAACT
          1 TTGTTTTTAGTTGCACACTTAAACT

              
        331 TT
          1 TT

        333 TATTAGTGTA


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.21, C:0.17, G:0.10, T:0.52


Consensus pattern (25 bp):   
TTGTTTTTAGTTGCACACTTAAACT
Done.