Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013732.1 Kokia drynarioides strain JFW-HI SEQ_128760, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39145
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Warning! 407 characters in sequence are not A, C, G, or T
Found at i:134 original size:30 final size:30
Alignment explanation
Indices: 98--243 Score: 168
Period size: 30 Copynumber: 4.9 Consensus size: 30
88 ATTAAAACTA
98 GGTCAAATTTGAATTTTTGGAAAGTTTGGG
1 GGTCAAATTTGAATTTTTGGAAAGTTTGGG
* * *
128 GGTCAAATTAGAATTTTTGGAAGGTTCGGG
1 GGTCAAATTTGAATTTTTGGAAAGTTTGGG
* * * * *
158 GGTCAAAATTAAAATTTTAGAAAGTTTAGG
1 GGTCAAATTTGAATTTTTGGAAAGTTTGGG
*
188 GGTCAAATTTGAATTTTTGGAAAGTTT-GA
1 GGTCAAATTTGAATTTTTGGAAAGTTTGGG
* ** *
217 GTTCAAATTCAAATTTTTGTAAAGTTT
1 GGTCAAATTTGAATTTTTGGAAAGTTT
244 AAGAGTTAAA
Statistics
Matches: 96, Mismatches: 20, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
29 24 0.25
30 72 0.75
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.39
Consensus pattern (30 bp):
GGTCAAATTTGAATTTTTGGAAAGTTTGGG
Found at i:3100 original size:43 final size:43
Alignment explanation
Indices: 3039--3126 Score: 131
Period size: 43 Copynumber: 2.0 Consensus size: 43
3029 AAATCCGCTC
* *
3039 TTGCGACTTCAATCTGCCCCTCTATAGCTTTAGATGAATGAGA
1 TTGCGACTTCAATCTGCCCCTCTACAACTTTAGATGAATGAGA
* * *
3082 TTGCGGCTTCAATCTGCCCCTCTACAACTTTAGGTGTATGAGA
1 TTGCGACTTCAATCTGCCCCTCTACAACTTTAGATGAATGAGA
3125 TT
1 TT
3127 TGCCATTGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (43 bp):
TTGCGACTTCAATCTGCCCCTCTACAACTTTAGATGAATGAGA
Found at i:3731 original size:12 final size:12
Alignment explanation
Indices: 3714--3745 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
3704 TGAGAAGATA
3714 TCAAAATATTAG
1 TCAAAATATTAG
*
3726 TCAAAACATTAG
1 TCAAAATATTAG
3738 TCAAAATA
1 TCAAAATA
3746 ACAAATGTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.53, C:0.12, G:0.06, T:0.28
Consensus pattern (12 bp):
TCAAAATATTAG
Found at i:9650 original size:20 final size:20
Alignment explanation
Indices: 9627--9672 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
9617 AAATTGAGTA
* *
9627 AATAAATAACCAAATAAATG
1 AATAAATAAACAAACAAATG
*
9647 AATAAATAAAGAAACAAATG
1 AATAAATAAACAAACAAATG
9667 AATAAA
1 AATAAA
9673 ATAATATACA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.70, C:0.07, G:0.07, T:0.17
Consensus pattern (20 bp):
AATAAATAAACAAACAAATG
Found at i:9664 original size:24 final size:25
Alignment explanation
Indices: 9614--9665 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
9604 ACAATAGGAT
* * *
9614 AATAAATTGAGTAAATAAATAACCA
1 AATAAATTGAATAAATAAAGAAACA
9639 AATAAA-TGAATAAATAAAGAAACA
1 AATAAATTGAATAAATAAAGAAACA
9663 AAT
1 AAT
9666 GAATAAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 18 0.75
25 6 0.25
ACGTcount: A:0.65, C:0.06, G:0.08, T:0.21
Consensus pattern (25 bp):
AATAAATTGAATAAATAAAGAAACA
Found at i:9897 original size:30 final size:30
Alignment explanation
Indices: 9799--9985 Score: 180
Period size: 30 Copynumber: 6.2 Consensus size: 30
9789 TTAAAATCAA
* * *
9799 GTTAAATTTGAATTTTTTAGAAAATTTAAGG
1 GTTAAATTTGAA-TTTTTGGAAAGTTTGAGG
* * * *
9830 GTCAAATTGGAATTTTTGTAAGGTTTGAGG
1 GTTAAATTTGAATTTTTGGAAAGTTTGAGG
* * *
9860 GTCAAATTTGAATTTTTGGAAAGCTTGGGG
1 GTTAAATTTGAATTTTTGGAAAGTTTGAGG
** *
9890 GTTAAATTCAAATTTTTGGAAAGTTCG-GG
1 GTTAAATTTGAATTTTTGGAAAGTTTGAGG
** *
9919 TGTTAAATTCAAAATTTTGGAAAGTTT-AGGG
1 -GTTAAATTTGAATTTTTGGAAAGTTTGA-GG
*
9950 GTTAAATTTGAATTTTTGAAAAGTTTGAGG
1 GTTAAATTTGAATTTTTGGAAAGTTTGAGG
9980 GTTAAA
1 GTTAAA
9986 ACATAATTTT
Statistics
Matches: 129, Mismatches: 23, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
29 2 0.02
30 114 0.88
31 13 0.10
ACGTcount: A:0.33, C:0.03, G:0.24, T:0.40
Consensus pattern (30 bp):
GTTAAATTTGAATTTTTGGAAAGTTTGAGG
Found at i:11067 original size:17 final size:16
Alignment explanation
Indices: 11041--11076 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
11031 TTTATAAAAT
*
11041 AAATAAATAAAAATAA
1 AAATAAATAAAAACAA
11057 AAATAAAATAAAAACAA
1 AAAT-AAATAAAAACAA
11074 AAA
1 AAA
11077 GAGAAATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (16 bp):
AAATAAATAAAAACAA
Found at i:11514 original size:18 final size:17
Alignment explanation
Indices: 11467--11515 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
11457 ATTTACAGGT
11467 ATAAATAATAAGAAAACA
1 ATAAATAATAA-AAAACA
* *
11485 ATATATACATAAAATACA
1 ATAAATA-ATAAAAAACA
11503 ATAAGATAATAAA
1 ATAA-ATAATAAA
11516 TTGAGTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 19 0.73
19 7 0.27
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.22
Consensus pattern (17 bp):
ATAAATAATAAAAAACA
Found at i:11718 original size:30 final size:28
Alignment explanation
Indices: 11684--11894 Score: 170
Period size: 30 Copynumber: 7.0 Consensus size: 28
11674 TTAAAACTGA
*
11684 GTCAAATTTGAATTTTTAGAAAGTTTGGG
1 GTCAAATTCGAATTTTT-GAAAGTTTGGG
* *
11713 AGTCAAATTTGAATTTTTTGAAAATTTGAGG
1 -GTCAAATTCGAA-TTTTTGAAAGTTTG-GG
* * *
11744 GTCAAATTAGAATTTTTGGAAGGTTTGAGA
1 GTCAAATTCGAATTTTT-GAAAGTTTG-GG
* * * *
11774 GTTAAATTTGAAATTTTGCAAAAGTTCGAGG
1 GTCAAATTCGAATTTTTG--AAAGTTTG-GG
* *
11805 GTTAAATTCAAATTTTTGGAAAGTTTTGGG
1 GTCAAATTCGAATTTTT-GAAAG-TTTGGG
*
11835 GTCAAATTCAAATTTTTAGAAAGTTTGAGG
1 GTCAAATTCGAATTTTT-GAAAGTTTG-GG
*
11865 GTCAAATTCAAATTTTTGAAAAGTTTGGG
1 GTCAAATTCGAATTTTTG-AAAGTTTGGG
11894 G
1 G
11895 ATTAAAGCAT
Statistics
Matches: 155, Mismatches: 17, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
29 14 0.09
30 108 0.70
31 32 0.21
32 1 0.01
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.39
Consensus pattern (28 bp):
GTCAAATTCGAATTTTTGAAAGTTTGGG
Found at i:11751 original size:60 final size:60
Alignment explanation
Indices: 11684--11893 Score: 237
Period size: 60 Copynumber: 3.5 Consensus size: 60
11674 TTAAAACTGA
** *
11684 GTCAAATTTGAATTTTTAGAAAGTTTGGGAGTCAAATTTGAATTTTTTGAAAATTTGAGG
1 GTCAAATTCAAATTTTTGGAAAGTTTGGGAGTCAAATTTGAATTTTTTGAAAATTTGAGG
* * * * *
11744 GTCAAATT-AGAATTTTTGGAAGGTTTGAGAGTTAAATTTGAA-ATTTTGCAAAAGTTCGAGG
1 GTCAAATTCA-AATTTTTGGAAAGTTTGGGAGTCAAATTTGAATTTTTTG-AAAA-TTTGAGG
* ** * *
11805 GTTAAATTCAAATTTTTGGAAAGTTTTGGG-GTCAAATTCAAATTTTTAGAAAGTTTGAGG
1 GTCAAATTCAAATTTTTGGAAAG-TTTGGGAGTCAAATTTGAATTTTTTGAAAATTTGAGG
*
11865 GTCAAATTCAAATTTTTGAAAAGTTTGGG
1 GTCAAATTCAAATTTTTGGAAAGTTTGGG
11894 GATTAAAGCA
Statistics
Matches: 125, Mismatches: 19, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
59 11 0.09
60 67 0.54
61 37 0.30
62 10 0.08
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.39
Consensus pattern (60 bp):
GTCAAATTCAAATTTTTGGAAAGTTTGGGAGTCAAATTTGAATTTTTTGAAAATTTGAGG
Found at i:11812 original size:91 final size:90
Alignment explanation
Indices: 11724--11889 Score: 212
Period size: 91 Copynumber: 1.8 Consensus size: 90
11714 GTCAAATTTG
* * * * *
11724 AATTTTTTGAAA-ATTTGAGGGTCAAATT-AGAATTTTTGGAAGGTTTGAGAGTTAAATTTGAAA
1 AATTTTTGGAAAGATTTG-GGGTCAAATTCA-AATTTTTAGAAAGTTTGAGAGTCAAA-TTCAAA
11787 -TTTTGCAAAAGTTCGAGGGTTAAATTCA
63 TTTTTG-AAAAGTTCGAGGGTTAAATTCA
* *
11815 AATTTTTGGAAAGTTTTGGGGTCAAATTCAAATTTTTAGAAAGTTTGAGGGTCAAATTCAAATTT
1 AATTTTTGGAAAGATTTGGGGTCAAATTCAAATTTTTAGAAAGTTTGAGAGTCAAATTCAAATTT
11880 TTGAAAAGTT
66 TTGAAAAGTT
11890 TGGGGATTAA
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
90 12 0.18
91 48 0.74
92 5 0.08
ACGTcount: A:0.35, C:0.05, G:0.21, T:0.39
Consensus pattern (90 bp):
AATTTTTGGAAAGATTTGGGGTCAAATTCAAATTTTTAGAAAGTTTGAGAGTCAAATTCAAATTT
TTGAAAAGTTCGAGGGTTAAATTCA
Found at i:19387 original size:67 final size:66
Alignment explanation
Indices: 19272--19496 Score: 236
Period size: 67 Copynumber: 3.4 Consensus size: 66
19262 ACTATCGCTT
* * * * * *
19272 GCTATGGT-TATACACATCATACCCCATTTTTAATGTCTTGGCGAACTCTATATGTTGCCATAGC
1 GCTATGGTCT-TACACATTAT-TCCCATGTTTAATGTCCTAGCGAACTCTCTATGTTGCCATAGC
*
19336 CGA
64 TGA
* * *
19339 GTTATGGTCTTACACATTATTCTCCATGTTTAATGTCCTAGCGGACTCTCCATGTTGCCATAGCT
1 GCTATGGTCTTACACATTATTC-CCATGTTTAATGTCCTAGCGAACTCTCTATGTTGCCATAGCT
19404 GA
65 GA
* * * * * * *
19406 GCTATGATCTTACATATTGTTCCATATGTTTAATGTCCTAGTGAACTCTCTATGTTACCATAGTT
1 GCTATGGTCTTACACATTATTCC-CATGTTTAATGTCCTAGCGAACTCTCTATGTTGCCATAGCT
19471 GA
65 GA
* *
19473 GCTATGGTCTTATAGATTATTCCC
1 GCTATGGTCTTACACATTATTCCC
19497 CATTACAGCC
Statistics
Matches: 130, Mismatches: 25, Indels: 7
0.80 0.15 0.04
Matches are distributed among these distances:
66 2 0.02
67 127 0.98
68 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (66 bp):
GCTATGGTCTTACACATTATTCCCATGTTTAATGTCCTAGCGAACTCTCTATGTTGCCATAGCTG
A
Found at i:33689 original size:30 final size:31
Alignment explanation
Indices: 33633--33695 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 31
33623 CATAAAAATT
* *
33633 ATAAAAATATTAATTAAATTATAAAAATGAA
1 ATAAAAATATTAAATAAATTATAAAAATAAA
33664 ATAAAAA-ATTAAATAATATTA-AAAAATAAA
1 ATAAAAATATTAAATAA-ATTATAAAAATAAA
33694 AT
1 AT
33696 TAACTCTTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 18 0.62
31 11 0.38
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (31 bp):
ATAAAAATATTAAATAAATTATAAAAATAAA
Found at i:33922 original size:22 final size:23
Alignment explanation
Indices: 33877--33924 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
33867 CTTTGAGAGC
* *
33877 TTTAGAGAGGAATTTGTGTGAAA
1 TTTAGAGAGGAAATTGAGTGAAA
33900 TTTAGAGA-GAAATTGAGTGAAA
1 TTTAGAGAGGAAATTGAGTGAAA
33922 TTT
1 TTT
33925 GTGTGAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.38, C:0.00, G:0.27, T:0.35
Consensus pattern (23 bp):
TTTAGAGAGGAAATTGAGTGAAA
Found at i:35252 original size:40 final size:39
Alignment explanation
Indices: 35206--35330 Score: 148
Period size: 40 Copynumber: 3.2 Consensus size: 39
35196 ATCTTATTTA
* *
35206 TTATATTTTTTCGTTTAGATCTTATGTTTTACATATATAT
1 TTATATTTTTT-GTTCAGATATTATGTTTTACATATATAT
*
35246 TTATATTGTTTTGTTCAGATATGATGTTTTACATATATA-
1 TTATATT-TTTTGTTCAGATATTATGTTTTACATATATAT
* * *
35285 -TAT-TGTTTTGTTCAGATATTGTGTTTTACATAAATATT
1 TTATATTTTTTGTTCAGATATTATGTTTTACATATATA-T
35323 TTATATTT
1 TTATATTT
35331 ATGTTATTTC
Statistics
Matches: 72, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
36 28 0.39
37 1 0.01
38 3 0.04
39 3 0.04
40 33 0.46
41 4 0.06
ACGTcount: A:0.26, C:0.06, G:0.10, T:0.58
Consensus pattern (39 bp):
TTATATTTTTTGTTCAGATATTATGTTTTACATATATAT
Found at i:35294 original size:36 final size:36
Alignment explanation
Indices: 35242--35321 Score: 126
Period size: 36 Copynumber: 2.2 Consensus size: 36
35232 TTTTACATAT
*
35242 ATATTTATATTGTTTTGTTCAGATA-TGATGTTTTAC
1 ATATATATATTGTTTTGTTCAGATATTG-TGTTTTAC
35278 ATATATATATTGTTTTGTTCAGATATTGTGTTTTAC
1 ATATATATATTGTTTTGTTCAGATATTGTGTTTTAC
*
35314 ATAAATAT
1 ATATATAT
35322 TTTATATTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
36 39 0.95
37 2 0.05
ACGTcount: A:0.29, C:0.05, G:0.12, T:0.54
Consensus pattern (36 bp):
ATATATATATTGTTTTGTTCAGATATTGTGTTTTAC
Found at i:35303 original size:18 final size:18
Alignment explanation
Indices: 35247--35303 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
35237 CATATATATT
35247 TATATTGTTTTGTTCAGA
1 TATATTGTTTTGTTCAGA
** *
35265 TATGA-TGTTTTACAT-ATA
1 TAT-ATTGTTTT-GTTCAGA
35283 TATATTGTTTTGTTCAGA
1 TATATTGTTTTGTTCAGA
35301 TAT
1 TAT
35304 TGTGTTTTAC
Statistics
Matches: 29, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
17 2 0.07
18 25 0.86
19 2 0.07
ACGTcount: A:0.26, C:0.05, G:0.14, T:0.54
Consensus pattern (18 bp):
TATATTGTTTTGTTCAGA
Found at i:35626 original size:77 final size:77
Alignment explanation
Indices: 35482--36118 Score: 745
Period size: 77 Copynumber: 8.3 Consensus size: 77
35472 ATTCCTGCTA
* * * * *
35482 TTCAACAGAATTTA-TTCGATTTTATTTTTTCC-AACGAGAATTAATTAAATAATTAT-TTTTAG
1 TTCAACAGAATTGATTTTGATTTTA---TTTCCAAACAAGAATTAATTAAATAATTCTGTTTCAG
*
35544 GATTTATTCCTGTCG
63 GATTTATTCTTGTCG
* * * * **
35559 TTCAACAGAATTGATTTTTATTTTGTTTCCAAACAAGTATTAATTAAATAATTCTATTTCAAAAT
1 TTCAACAGAATTGATTTTGATTTTATTTCCAAACAAGAATTAATTAAATAATTCTGTTTCAGGAT
*
35624 TTATTCTTTTCG
66 TTATTCTTGTCG
* * ** *
35636 TTCAACAGAATTGATTTT-AGTTTTGTTTCCAGACAATTATTAATTAAATAATTCTATTTCAGGA
1 TTCAACAGAATTGATTTTGA-TTTTATTTCCAAACAAGAATTAATTAAATAATTCTGTTTCAGGA
* *
35700 TTTATTCAT-ACTG
65 TTTATTCTTGTC-G
* * *
35713 TTCAATAGAATTGATTTTGATTTTATTTCTAAACAAGAATTAATTAAATAATTCTGCTTCAGGAT
1 TTCAACAGAATTGATTTTGATTTTATTTCCAAACAAGAATTAATTAAATAATTCTGTTTCAGGAT
* * *
35778 TTATTCCTGCCA
66 TTATTCTTGTCG
* *
35790 TTCAACAAAATTGATTTTGATTTTATTTCCAAACAAAAATTAATTAAATAAGTT-TGTTTCAGGA
1 TTCAACAGAATTGATTTTGATTTTATTTCCAAACAAGAATTAATTAAATAA-TTCTGTTTCAGGA
35854 TTTATTCTTGTCG
65 TTTATTCTTGTCG
* * *
35867 TTCAACAG-A--GATTTTGATTTTGTTTCCAAACAAGTATTAATTAAATAATTCTGTTTCAAGAT
1 TTCAACAGAATTGATTTTGATTTTATTTCCAAACAAGAATTAATTAAATAATTCTGTTTCAGGAT
* *
35929 TTATTCCTGTTG
66 TTATTCTTGTCG
* * * * *
35941 TTCAACAGAATTGTTTTTTATTTTATTTCCAAATAAGAATTAATTAAATAATTCTATTTCAAGAT
1 TTCAACAGAATTGATTTTGATTTTATTTCCAAACAAGAATTAATTAAATAATTCTGTTTCAGGAT
* ** *
36006 TTAGTCTTACCA
66 TTATTCTTGTCG
*
36018 TTCAACAGAATTGATTTTGATTTTATTTCCAAACAAGAATTAATTATATAATTCTGTTTCAGGAT
1 TTCAACAGAATTGATTTTGATTTTATTTCCAAACAAGAATTAATTAAATAATTCTGTTTCAGGAT
*
36083 TTATTATTGAT-G
66 TTATTCTTG-TCG
36095 TTCAACAGAATTGATTTTGATTTT
1 TTCAACAGAATTGATTTTGATTTT
36119 GTTTTAGAAT
Statistics
Matches: 480, Mismatches: 67, Indels: 26
0.84 0.12 0.05
Matches are distributed among these distances:
73 2 0.00
74 64 0.13
75 6 0.01
76 24 0.05
77 373 0.78
78 11 0.02
ACGTcount: A:0.33, C:0.11, G:0.10, T:0.46
Consensus pattern (77 bp):
TTCAACAGAATTGATTTTGATTTTATTTCCAAACAAGAATTAATTAAATAATTCTGTTTCAGGAT
TTATTCTTGTCG
Found at i:36030 original size:305 final size:306
Alignment explanation
Indices: 35467--36123 Score: 905
Period size: 305 Copynumber: 2.1 Consensus size: 306
35457 TACTTTTCGA
* * * *
35467 GATTTATTCCTGCTATTCAACAGAATTTA-TTCGATTTTATTTTTTCCAACGAGAATTAATTAAA
1 GATTTATTCCTGCTATTCAACAGAATTGATTTTGATTTTA--TTTTCCAACAAAAATTAATTAAA
* *
35531 TAATTATTTTTAGGATTTATTCCTGTCGTTCAACAGAATTGATTTTTATTTTGTTTCCAAACAAG
64 TAATTATTTTCAGGATTTATTCCTGTCGTTCAACAGAA-TGATTTTGATTTTGTTTCCAAACAAG
* *
35596 TATTAATTAAATAATTCTATTTCAAAATTTATTCTTTTCGTTCAACAGAATTGATTTTAGTTTTG
128 TATTAATTAAATAATTCTATTTCAAAATTTATTCTGTTCGTTCAACAGAATTGATTTTAGTTTTA
* ** * * ** *
35661 TTTCCAGACAATTATTAATTAAATAATTCTATTTCAGGATTTATTCATACTGTTCAATAGAATTG
193 TTTCCAAACAAGAATTAATTAAATAATTCTATTTCAAGATTTAGTCATACCATTCAACAGAATTG
*
35726 ATTTTGATTTTATTTCTAAACAAGAATTAATTAAATAATTCTGCTTCAG
258 ATTTTGATTTTATTTCCAAACAAGAATTAATTAAATAATTCTGCTTCAG
* *
35775 GATTTATTCCTGCCATTCAACAAAATTGATTTTGATTTTA-TTTCCAAACAAAAATTAATTAAAT
1 GATTTATTCCTGCTATTCAACAGAATTGATTTTGATTTTATTTTCC-AACAAAAATTAATTAAAT
*
35839 AAGTT-TGTTTCAGGATTTATTCTTGTCGTTCAACAG-A-GATTTTGATTTTGTTTCCAAACAAG
65 AA-TTAT-TTTCAGGATTTATTCCTGTCGTTCAACAGAATGATTTTGATTTTGTTTCCAAACAAG
* * *
35901 TATTAATTAAATAATTCTGTTTCAAGATTTATTCCTGTT-GTTCAACAGAATTGTTTTTTA-TTT
128 TATTAATTAAATAATTCTATTTCAAAATTTATT-CTGTTCGTTCAACAGAATTG-ATTTTAGTTT
* *
35964 TATTTCCAAATAAGAATTAATTAAATAATTCTATTTCAAGATTTAGTCTTACCATTCAACAGAAT
191 TATTTCCAAACAAGAATTAATTAAATAATTCTATTTCAAGATTTAGTCATACCATTCAACAGAAT
* *
36029 TGATTTTGATTTTATTTCCAAACAAGAATTAATTATATAATTCTGTTTCAG
256 TGATTTTGATTTTATTTCCAAACAAGAATTAATTAAATAATTCTGCTTCAG
** * * *
36080 GATTTATTATTGATGTTCAACAGAATTGATTTTGATTTTGTTTT
1 GATTTATTCCTGCTATTCAACAGAATTGATTTTGATTTTATTTT
36124 AGAATTTTAA
Statistics
Matches: 308, Mismatches: 34, Indels: 16
0.86 0.09 0.04
Matches are distributed among these distances:
305 207 0.67
306 17 0.06
307 20 0.06
308 55 0.18
309 9 0.03
ACGTcount: A:0.33, C:0.11, G:0.10, T:0.46
Consensus pattern (306 bp):
GATTTATTCCTGCTATTCAACAGAATTGATTTTGATTTTATTTTCCAACAAAAATTAATTAAATA
ATTATTTTCAGGATTTATTCCTGTCGTTCAACAGAATGATTTTGATTTTGTTTCCAAACAAGTAT
TAATTAAATAATTCTATTTCAAAATTTATTCTGTTCGTTCAACAGAATTGATTTTAGTTTTATTT
CCAAACAAGAATTAATTAAATAATTCTATTTCAAGATTTAGTCATACCATTCAACAGAATTGATT
TTGATTTTATTTCCAAACAAGAATTAATTAAATAATTCTGCTTCAG
Done.