Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013735.1 Kokia drynarioides strain JFW-HI SEQ_128763, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3033
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.32


Found at i:2662 original size:11 final size:11

Alignment explanation


    Indices: 2646--2673  Score: 56
    Period size: 11  Copynumber: 2.5  Consensus size: 11

       2636 TAGGAACGAA

                       
       2646 AAAGAAACAAT
          1 AAAGAAACAAT

                       
       2657 AAAGAAACAAT
          1 AAAGAAACAAT

                  
       2668 AAAGAA
          1 AAAGAA

       2674 TAAAAAAGAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   17  1.00

ACGTcount: A:0.75, C:0.07, G:0.11, T:0.07


Consensus pattern (11 bp):   
AAAGAAACAAT
Done.