genome.fa.s13738.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013738.1 Kokia drynarioides strain JFW-HI SEQ_128766, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147981

Tables:   1   

This is table  1  of  1  ( 103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178--222	6	7.5	6	94	0	72	22	28	0	48	1.50
178--226	18	2.7	18	90	0	80	22	26	0	51	1.49
639--668	10	2.8	11	95	5	53	20	10	3	66	1.35
5640--5666	6	4.5	6	100	0	54	14	0	37	48	1.45
6668--6738	34	2.1	34	97	0	133	46	18	8	26	1.77
8797--9094	29	10.2	30	74	10	206	34	2	25	37	1.69
8758--9094	58	5.8	59	80	4	328	35	2	24	37	1.71
8790--9094	116	2.6	117	82	3	373	35	2	24	37	1.69
10139--10173	12	2.9	12	82	0	52	45	0	5	48	1.26
10845--10907	6	11.0	6	75	16	62	57	0	1	41	1.08
10843--10922	11	7.2	11	73	8	63	57	3	1	37	1.25
10845--10906	29	2.2	28	88	2	88	58	0	1	40	1.08
10845--10897	18	3.0	18	86	5	81	56	0	1	41	1.10
11568--11634	6	11.7	6	73	9	59	44	1	1	52	1.19
11571--11630	17	3.5	17	84	4	77	43	1	1	53	1.20
13402--13488	30	2.9	29	81	6	84	34	31	4	29	1.78
17873--17915	22	2.0	21	82	13	52	44	11	30	13	1.80
22713--22781	35	2.0	35	97	0	129	42	15	23	18	1.89
25754--25872	47	2.5	47	94	0	202	36	15	26	22	1.93
25549--26052	251	2.0	253	89	0	769	35	20	22	21	1.96
28678--28750	29	2.5	29	86	6	94	38	26	2	32	1.71
28728--28866	58	2.4	59	77	13	144	33	24	6	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30069--30136	21	3.2	21	78	0	64	27	19	19	33	1.96
30407--30462	20	2.8	20	83	0	76	26	25	7	41	1.81
33839--33944	31	3.6	30	69	23	89	50	12	11	26	1.73
37474--37552	6	13.7	6	75	12	76	44	0	2	53	1.14
37474--37552	17	4.6	17	83	1	104	44	0	2	53	1.14
37474--37554	23	3.5	23	73	15	69	45	0	2	51	1.14
38241--38318	3	25.7	3	70	7	50	53	1	6	38	1.35
38246--38322	15	5.1	15	70	9	66	54	1	5	38	1.31
38241--38317	18	4.2	18	75	9	66	53	1	6	38	1.35
39408--39559	30	5.1	29	74	12	121	35	25	3	35	1.73
39409--39609	59	3.4	61	80	6	216	35	24	3	36	1.73
39408--39521	30	3.8	30	79	10	133	35	22	4	36	1.75
39414--39609	30	6.6	29	72	13	89	35	25	3	36	1.71
39446--39611	30	5.6	29	72	13	99	35	25	3	36	1.71
39680--39741	28	2.2	28	94	0	106	37	30	6	25	1.81
42589--42721	30	4.4	30	80	1	124	37	21	2	39	1.66
42655--42764	30	3.7	29	78	6	105	35	29	2	32	1.72
54594--55148	39	14.3	38	69	9	244	26	30	16	26	1.97
54594--54842	78	3.2	78	83	2	313	25	30	17	26	1.97
54703--55167	195	2.4	195	81	1	529	26	29	16	27	1.97
54594--55166	78	7.4	78	74	7	310	26	29	16	26	1.97
54983--55229	117	2.1	117	80	1	271	25	29	16	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56592--56675	44	1.9	44	80	9	100	32	5	2	59	1.34
57287--57361	29	2.6	29	76	6	80	37	28	0	34	1.57
57287--57373	29	2.9	29	70	13	70	36	28	0	34	1.58
60333--60514	87	2.1	88	80	11	205	40	13	6	39	1.71
60641--60722	15	4.9	15	72	16	56	26	2	0	70	0.99
65432--65475	20	2.1	21	84	12	56	38	4	9	47	1.56
66300--66338	14	2.8	14	92	0	60	41	2	2	53	1.28
71074--71101	2	14.0	2	100	0	56	50	0	0	50	1.00
73032--73063	7	4.6	7	100	0	64	46	15	25	12	1.81
74622--74691	20	3.4	20	80	7	70	35	5	8	50	1.57
74993--75039	23	2.0	23	83	0	58	34	19	19	27	1.96
75026--75069	24	1.9	22	86	9	61	40	9	13	36	1.76
77176--77243	25	2.8	25	97	2	129	50	4	8	36	1.54
77372--77413	6	7.2	6	86	5	50	0	33	0	66	0.92
86267--86329	31	2.0	31	100	0	126	31	19	14	34	1.91
86968--87013	14	3.3	14	90	0	65	36	17	13	32	1.88
86980--87013	7	4.9	7	96	0	59	38	14	14	32	1.87
95035--95203	93	1.8	94	87	8	258	63	10	14	10	1.51
97067--97354	50	5.8	49	71	11	171	35	16	28	19	1.94
97058--97408	99	3.6	99	79	4	363	36	15	28	19	1.93
97215--97371	50	3.2	49	77	11	169	38	15	28	17	1.91
96967--97517	198	2.8	196	76	6	474	37	16	26	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97749--98303	113	4.9	113	84	3	695	35	16	24	23	1.95
97749--98302	227	2.4	227	87	3	758	35	16	24	23	1.95
98248--98579	123	2.7	122	80	5	350	39	17	19	23	1.92
100599--100634	3	12.0	3	100	0	72	33	0	0	66	0.92
106569--106607	3	13.0	3	84	10	53	33	0	0	66	0.92
107831--107926	7	13.9	7	71	10	54	43	25	4	27	1.72
107880--107932	21	2.5	21	79	11	63	47	24	1	26	1.62
107880--107942	21	3.0	21	74	21	60	44	26	3	25	1.69
108082--108123	14	3.0	14	85	0	57	23	2	30	42	1.67
108757--108794	20	1.9	20	88	0	58	65	2	2	28	1.19
108768--108811	21	2.1	21	82	0	52	65	4	0	29	1.12
108789--108826	18	2.1	19	85	5	51	52	2	0	44	1.14
109460--109513	19	2.7	20	88	5	83	57	9	0	33	1.31
109460--109514	20	2.7	21	86	13	80	56	9	0	34	1.31
110265--110304	19	2.0	19	85	9	53	62	2	0	35	1.09
110725--110762	20	2.0	19	85	10	51	50	7	0	42	1.31
110815--110875	32	1.9	31	86	3	86	32	1	1	63	1.13
111408--111433	7	3.7	7	100	0	52	30	15	0	53	1.42
112601--112726	43	2.9	43	77	9	139	30	23	12	32	1.92
113035--113159	66	1.9	66	81	3	153	16	25	16	42	1.87
119068--119155	40	2.2	39	79	18	101	47	2	6	43	1.42
120045--120236	89	2.2	89	98	0	366	31	15	15	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121410--121449	21	1.9	21	89	0	62	77	2	5	15	1.04
122251--122293	19	2.3	19	84	8	52	58	4	0	37	1.19
123702--123843	42	3.4	42	83	3	180	19	26	16	37	1.93
124885--125019	41	3.3	40	84	5	171	20	27	14	38	1.90
124884--125059	82	2.1	82	79	6	187	21	25	14	39	1.91
130408--130651	121	2.0	121	99	0	479	28	19	24	27	1.98
133475--133518	23	1.9	23	81	9	54	47	11	9	31	1.71
142010--142055	23	2.0	23	95	0	83	28	17	32	21	1.96
142667--142737	37	1.9	37	97	0	133	50	14	16	18	1.78
147775--147860	17	5.2	17	84	6	97	41	0	5	52	1.25
147788--147860	17	4.4	17	87	1	103	43	0	2	53	1.15
147793--147860	6	11.8	6	72	20	56	44	0	2	52	1.16
147862--147917	13	4.2	13	84	13	62	55	21	8	14	1.66
147892--147947	15	3.7	15	92	0	85	44	26	12	16	1.83
147892--147955	30	2.1	30	82	5	76	43	29	10	15	1.81

Tables:   1

The End!