Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001374.1 Kokia drynarioides strain JFW-HI SEQ_112842, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2309
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.31


Found at i:1423 original size:20 final size:20

Alignment explanation


    Indices: 1394--1432  Score: 60
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1384 GTTCAATGAG

                 *    *         
       1394 AATGTGCATAGATTATCGGA
          1 AATGTACATAAATTATCGGA

                               
       1414 AATGTACATAAATTATCGG
          1 AATGTACATAAATTATCGG

       1433 CAGCTGAACA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31


Consensus pattern (20 bp):   
AATGTACATAAATTATCGGA
Done.