Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013745.1 Kokia drynarioides strain JFW-HI SEQ_128773, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18305
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34

Warning! 9 characters in sequence are not A, C, G, or T


Found at i:12902 original size:15 final size:14

Alignment explanation


    Indices: 12878--12909  Score: 55
    Period size: 15  Copynumber: 2.2  Consensus size: 14

      12868 CAGTGACGAT

                          
      12878 AAAAATGCAATAAC
          1 AAAAATGCAATAAC

                           
      12892 AAAAGATGCAATAAC
          1 AAAA-ATGCAATAAC

               
      12907 AAA
          1 AAA

      12910 TAAAGTATAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    4  0.24
  15   13  0.76

ACGTcount: A:0.66, C:0.12, G:0.09, T:0.12


Consensus pattern (14 bp):   
AAAAATGCAATAAC
Done.