genome.fa.s13746.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013746.1 Kokia drynarioides strain JFW-HI SEQ_128774, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  182578

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2016--2149	70	1.9	70	96	0	250	37	22	20	20	1.95
2015--2166	70	2.2	71	90	3	245	35	22	20	21	1.96
3045--3144	50	2.0	50	100	0	200	26	22	20	32	1.98
5883--5920	18	2.1	18	85	9	51	2	18	2	76	1.02
13150--13194	17	2.9	16	81	18	51	71	6	8	13	1.31
21300--21391	19	4.9	18	72	19	73	67	1	2	29	1.09
21327--21387	30	2.0	30	84	12	81	70	1	0	27	0.97
21336--21378	21	2.0	22	86	4	61	72	2	0	25	0.97
25415--25509	47	2.0	47	97	0	181	43	11	8	36	1.71
26060--26165	52	2.0	52	100	0	212	33	19	9	36	1.84
26367--26424	27	2.2	26	81	9	64	31	17	3	48	1.64
27881--27962	29	2.8	30	76	9	80	41	7	18	32	1.78
27945--28117	30	5.9	29	75	14	126	40	5	21	31	1.77
29591--29661	6	12.0	6	72	14	58	49	2	4	43	1.36
29582--29667	43	2.0	44	88	6	131	44	3	6	45	1.47
29631--29663	17	1.9	17	100	0	66	57	0	0	42	0.98
30090--30297	78	2.7	78	86	0	290	26	18	22	32	1.97
30380--31164	50	15.9	50	78	3	685	18	30	16	34	1.93
30318--31164	99	8.6	98	79	5	715	18	30	16	34	1.93
38146--38206	22	2.8	22	90	7	90	72	0	11	16	1.13
38172--38201	15	1.9	16	93	6	53	70	0	13	16	1.18
39009--39053	19	2.3	20	81	11	58	57	6	0	35	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39975--40029	4	13.8	4	78	21	62	78	0	3	18	0.90
39973--40034	13	4.6	13	72	20	56	79	0	3	17	0.87
39973--40031	7	7.6	7	85	14	64	79	0	3	16	0.86
41205--41244	21	1.9	21	94	0	71	27	12	12	47	1.77
41212--41255	21	2.1	21	86	0	61	29	11	13	45	1.79
42793--42832	21	1.9	21	94	0	71	75	2	10	12	1.15
43639--43681	19	2.3	19	84	8	52	58	4	0	37	1.19
45793--46008	60	3.6	60	74	10	174	39	3	18	37	1.69
45777--45956	30	6.1	30	77	7	136	38	3	18	39	1.68
52779--52827	22	2.2	23	78	10	57	53	0	22	24	1.47
53325--53355	15	2.1	15	100	0	62	48	19	0	32	1.49
53331--53364	15	2.3	15	89	0	50	52	14	0	32	1.42
55385--55464	43	1.9	43	82	10	103	26	7	7	58	1.52
55498--55534	20	1.9	19	89	10	58	48	2	0	48	1.15
62676--62725	21	2.4	22	71	18	52	40	20	16	24	1.91
63370--63505	36	3.8	36	94	0	236	24	26	14	34	1.94
66903--67108	106	1.9	106	91	1	333	33	16	16	32	1.92
77200--77234	18	1.9	18	94	0	61	57	0	0	42	0.99
78873--78918	2	23.0	2	95	0	83	52	0	0	47	1.00
81623--81669	24	2.0	24	91	0	76	23	6	10	59	1.53
85650--85790	30	4.7	30	81	8	144	41	2	19	36	1.66
86527--86572	22	2.1	22	84	11	60	10	2	17	69	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87519--88372	38	21.9	38	75	8	530	26	16	25	31	1.97
87518--88373	78	11.0	77	76	11	628	26	16	25	31	1.97
87474--88373	116	7.7	115	76	9	650	26	16	24	31	1.97
88486--89212	99	7.4	99	75	8	429	17	31	16	34	1.93
88553--88846	148	2.0	149	81	6	346	16	30	17	35	1.92
88510--89170	50	13.4	49	72	10	332	17	31	16	34	1.92
88697--88976	95	2.9	96	81	6	309	15	32	16	35	1.90
88561--89212	243	2.6	244	84	5	792	17	31	16	34	1.92
88817--89164	148	2.4	145	83	3	430	17	32	16	33	1.92
90172--90209	11	3.5	11	86	10	51	5	10	0	84	0.77
94699--94949	109	2.4	104	81	6	272	38	18	13	29	1.89
95467--95531	30	2.2	30	83	5	87	46	1	16	35	1.57
95482--95589	30	3.6	29	78	6	99	40	2	19	37	1.66
101749--101789	17	2.4	18	80	19	52	14	17	17	51	1.77
104839--104900	24	2.6	24	89	5	90	27	14	8	50	1.71
108327--108448	63	1.9	63	91	0	199	19	26	5	48	1.71
108366--108422	24	2.4	24	81	0	69	19	24	3	52	1.61
110635--110701	21	3.2	21	89	2	91	41	22	14	20	1.89
110773--110843	21	3.2	21	67	18	63	35	22	9	32	1.87
110763--110831	21	3.0	24	64	20	65	37	23	10	28	1.87
110802--111021	116	1.9	116	86	1	316	37	27	8	25	1.85
111514--111614	35	2.8	36	92	3	159	22	28	12	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113298--113345	13	3.7	13	75	10	53	58	8	10	22	1.58
114050--114107	21	2.8	21	78	0	62	31	27	15	25	1.96
118547--118588	15	2.7	16	77	7	50	42	11	2	42	1.54
121627--121657	16	1.9	16	93	0	53	19	3	0	77	0.90
122358--122484	30	4.3	30	83	5	152	30	23	7	37	1.83
127560--127615	29	1.9	29	82	13	71	75	0	23	1	0.90
128440--128744	49	6.3	48	74	7	213	35	18	26	20	1.95
128760--128863	42	2.5	42	84	3	120	43	11	24	21	1.85
128995--129172	75	2.4	75	78	3	189	41	20	16	21	1.91
129070--130164	123	8.9	123	85	3	1340	39	18	21	21	1.93
129514--129605	48	1.9	48	93	0	157	38	16	23	21	1.93
129884--129975	48	1.9	48	84	0	121	39	14	25	21	1.91
129070--130164	493	2.2	491	86	3	1495	39	18	21	21	1.93
131935--132019	29	2.9	30	83	3	118	35	21	5	37	1.78
137887--137921	18	1.9	18	94	0	61	51	2	0	45	1.16
140976--141032	19	3.0	19	97	0	105	42	3	1	52	1.28
141500--141531	12	2.8	12	90	9	50	71	15	0	12	1.14
146069--146134	33	2.0	33	100	0	132	27	9	9	54	1.62
146265--146309	23	2.0	24	86	8	67	62	0	2	35	1.08
159351--159387	18	2.1	18	89	0	56	24	27	0	48	1.51
165163--165207	6	7.5	6	89	0	72	17	28	0	53	1.44
165590--165971	195	2.0	195	98	0	746	30	15	9	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176960--177102	47	3.0	47	97	0	277	27	20	11	40	1.87
181687--181974	30	9.7	30	87	4	381	30	2	28	37	1.72

Tables:   1

The End!