Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013749.1 Kokia drynarioides strain JFW-HI SEQ_128777, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16766
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33

Warning! 150 characters in sequence are not A, C, G, or T


Found at i:6404 original size:13 final size:13

Alignment explanation


    Indices: 6386--6420  Score: 52
    Period size: 13  Copynumber: 2.7  Consensus size: 13

       6376 ATCTCGTTTC

                         
       6386 AAAACTAAAAATA
          1 AAAACTAAAAATA

                     **  
       6399 AAAACTAAACTTA
          1 AAAACTAAAAATA

                     
       6412 AAAACTAAA
          1 AAAACTAAA

       6421 TTCTAATAAA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  13   20  1.00

ACGTcount: A:0.71, C:0.11, G:0.00, T:0.17


Consensus pattern (13 bp):   
AAAACTAAAAATA

Found at i:11596 original size:37 final size:38

Alignment explanation


    Indices: 11526--11604  Score: 151
    Period size: 37  Copynumber: 2.1  Consensus size: 38

      11516 CAACCTAGAG

                                                  
      11526 TTAGTTTCTCTTATGCTCGAAAGAGATATTAGTATCAT
          1 TTAGTTTCTCTTATGCTCGAAAGAGATATTAGTATCAT

                                                  
      11564 TTAGTTTCTCTTATGCTCG-AAGAGATATTAGTATCAT
          1 TTAGTTTCTCTTATGCTCGAAAGAGATATTAGTATCAT

                
      11601 TTAG
          1 TTAG

      11605 GGATTTCTAT


Statistics
Matches: 41,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  37   22  0.54
  38   19  0.46

ACGTcount: A:0.28, C:0.13, G:0.16, T:0.43


Consensus pattern (38 bp):   
TTAGTTTCTCTTATGCTCGAAAGAGATATTAGTATCAT

Found at i:14697 original size:21 final size:20

Alignment explanation


    Indices: 14669--14708  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 20

      14659 ATTAAATAAG

                                 
      14669 CAAATAAA-TACAACAAGAAT
          1 CAAATAAATTA-AACAAGAAT

                                
      14689 CAAAGTAAATTAAACAAGAA
          1 CAAA-TAAATTAAACAAGAA

      14709 ATGATAAATC


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  20    4  0.22
  21   12  0.67
  22    2  0.11

ACGTcount: A:0.65, C:0.12, G:0.07, T:0.15


Consensus pattern (20 bp):   
CAAATAAATTAAACAAGAAT
Done.