genome.fa.s13752.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013752.1 Kokia drynarioides strain JFW-HI SEQ_128780, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  286890

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4062--4142	4	20.0	4	73	20	53	0	32	0	67	0.91
4055--4138	21	3.7	24	73	16	72	0	30	0	69	0.89
4059--4137	31	2.4	31	75	8	77	0	31	0	68	0.90
4763--4817	18	3.1	18	81	2	58	60	3	0	36	1.15
4778--4834	27	2.1	27	83	6	71	64	3	0	31	1.10
12788--13118	85	3.9	84	87	2	441	32	10	20	36	1.87
12788--13118	169	2.0	168	89	3	513	32	10	20	36	1.87
27917--27964	18	2.7	18	86	0	60	50	16	0	33	1.46
27917--27947	6	5.2	6	100	0	62	51	16	0	32	1.44
29094--29385	142	2.0	143	84	7	376	33	22	8	34	1.85
29981--30025	23	2.0	23	83	8	58	13	6	6	73	1.24
33612--33665	21	2.6	21	76	2	65	55	14	1	27	1.50
39443--39560	59	2.0	59	100	0	236	25	18	13	42	1.87
39599--39642	13	3.0	15	77	16	56	27	0	9	63	1.24
41060--41113	27	2.0	27	100	0	108	48	7	22	22	1.75
41911--42211	126	2.4	126	81	1	352	24	9	16	49	1.76
45102--45159	23	2.5	24	86	8	84	36	18	12	32	1.88
45288--45332	23	1.9	24	90	4	74	51	11	17	20	1.75
64292--64316	2	12.5	2	100	0	50	52	0	0	48	1.00
67846--67876	16	1.9	16	93	0	53	38	0	3	58	1.15
67974--68037	33	1.9	33	96	0	119	37	15	12	34	1.85
68144--68170	4	6.8	4	100	0	54	77	0	22	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74059--74132	31	2.3	32	84	9	89	52	6	8	32	1.57
75257--75284	2	14.0	2	100	0	56	50	0	50	0	1.00
76343--76378	12	2.9	12	87	4	54	77	0	16	5	0.94
77755--77941	60	3.2	59	68	10	141	40	18	16	24	1.90
86987--87015	13	2.2	13	100	0	58	37	24	6	31	1.82
94057--94103	22	2.2	20	81	7	58	46	0	0	53	1.00
94057--94107	20	2.5	20	78	12	59	45	0	0	54	0.99
100864--100926	29	2.1	30	88	2	92	38	17	7	36	1.79
117855--118075	60	3.8	56	77	10	142	38	4	23	33	1.77
117881--118419	29	18.6	28	75	13	249	35	3	25	35	1.74
117881--118410	58	9.1	58	76	10	358	35	3	26	34	1.74
117881--118348	115	4.1	116	76	13	371	35	3	26	33	1.74
118230--118418	30	6.4	29	78	8	143	32	2	26	37	1.71
120938--120985	14	3.4	14	77	11	53	35	25	16	22	1.95
122458--122510	11	4.7	11	74	4	52	58	3	1	35	1.27
122461--122534	17	4.4	17	85	0	103	59	4	1	35	1.25
122452--122534	34	2.4	34	91	0	130	57	3	1	37	1.24
124891--124926	18	2.0	18	100	0	72	50	5	33	11	1.61
125302--125349	24	1.9	26	84	16	66	45	0	22	31	1.53
125412--125584	23	7.5	22	76	12	84	12	23	23	41	1.88
128343--128367	3	8.3	3	100	0	50	0	32	0	68	0.90
128948--128974	11	2.5	11	100	0	54	29	11	14	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137997--138063	30	2.3	27	78	14	71	47	1	7	43	1.40
148713--148754	14	3.0	14	79	10	50	28	4	0	66	1.12
161418--161490	28	2.6	28	72	22	71	49	8	6	35	1.59
167244--167363	48	2.5	48	90	5	181	11	12	50	25	1.73
167244--167384	48	2.9	47	82	8	167	14	12	51	22	1.75
174726--174757	2	16.0	2	100	0	64	50	0	0	50	1.00
183874--183898	6	4.2	6	100	0	50	32	52	16	0	1.44
189820--189892	36	2.0	36	100	0	146	32	8	34	24	1.85
192241--192271	12	2.5	13	94	5	55	80	0	19	0	0.71
192270--192297	7	4.0	7	100	0	56	57	0	42	0	0.99
192248--192322	17	4.6	16	76	11	55	69	0	30	0	0.89
192659--192701	21	2.1	21	86	4	61	25	2	13	58	1.48
193170--193219	16	3.2	16	71	21	52	60	6	0	34	1.21
194509--194593	43	2.0	43	83	4	109	30	12	9	47	1.74
195161--195297	45	3.0	45	86	0	175	32	26	21	18	1.97
195292--195330	21	1.9	21	89	5	62	17	28	15	38	1.91
195563--195629	28	2.4	27	80	7	71	49	20	4	25	1.68
198932--198965	17	1.9	18	88	5	52	32	0	17	50	1.47
199414--199445	14	2.2	15	94	5	57	40	18	0	40	1.51
206086--206152	31	2.1	31	83	2	80	43	10	11	34	1.76
207176--207374	96	2.1	96	87	3	285	39	7	17	36	1.77
209853--210596	149	5.0	149	92	1	1204	27	20	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215984--216008	10	2.5	10	100	0	50	48	12	0	40	1.40
216775--216810	2	18.0	2	100	0	72	50	0	0	50	1.00
218486--218512	5	5.4	5	100	0	54	62	0	37	0	0.95
234531--234561	4	7.8	4	100	0	62	48	25	0	25	1.52
242082--242106	13	1.9	13	100	0	50	40	4	0	56	1.18
242085--242115	16	1.9	16	100	0	62	38	6	0	54	1.26
242217--242252	3	11.7	3	88	5	54	33	2	0	63	1.08
244286--244359	30	2.5	30	82	2	87	45	5	4	44	1.45
260513--260698	93	2.0	92	94	1	327	36	18	15	29	1.92
260599--260804	113	1.8	112	91	1	304	35	22	13	28	1.91
261670--262052	132	2.9	133	84	3	486	28	27	21	22	1.99
269085--269252	59	2.8	59	82	3	185	48	11	15	23	1.78
269092--269274	58	3.1	58	81	4	186	48	11	14	25	1.78
273170--273214	20	2.2	20	84	7	56	42	2	4	51	1.34
273452--273476	13	1.9	13	100	0	50	48	8	8	36	1.62
277201--277294	21	4.4	21	69	9	64	40	7	8	43	1.63
278506--278565	29	2.0	28	84	9	75	53	8	0	38	1.31
279467--279510	22	2.1	21	88	12	65	59	0	0	40	0.98
279469--279510	21	2.0	22	90	4	68	59	0	0	40	0.97

Tables:   1

The End!