Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013753.1 Kokia drynarioides strain JFW-HI SEQ_128781, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6384
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Found at i:892 original size:18 final size:18
Alignment explanation
Indices: 869--905 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
859 TTGGTGATCA
869 AAATTGAAAGTGAAAGTG
1 AAATTGAAAGTGAAAGTG
* *
887 AAATTGGAATTGAAAGTG
1 AAATTGAAAGTGAAAGTG
905 A
1 A
906 TGTGAATTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.27, T:0.24
Consensus pattern (18 bp):
AAATTGAAAGTGAAAGTG
Found at i:3458 original size:101 final size:100
Alignment explanation
Indices: 3340--3529 Score: 281
Period size: 101 Copynumber: 1.9 Consensus size: 100
3330 AAATCCTATA
*
3340 TCCCTAAAGTTACAGTGGAATGGAGTGAAGCTACAACACCAAATCCTATATCCCTAAAGTTACAG
1 TCCCTAAAGTTACAGTGGAATGGAGTGAAGCCACAACACCAAATCCTATATCCCTAAAGTTACA-
*
3405 TGGATCAAATTAAAACTAAAGTAGCGGATCTCAATC
65 AGGATCAAATTAAAACTAAAGTAGCGGATCTCAATC
** * * *
3441 TCCCTAAAGTTGTAGTGGAATGGAGTGAAGCCACAACACCATATCCTATATCCCTGAAGTTGCAA
1 TCCCTAAAGTTACAGTGGAATGGAGTGAAGCCACAACACCAAATCCTATATCCCTAAAGTTACAA
* * *
3506 GGATCGAATTAAAGCTACAGTAGC
66 GGATCAAATTAAAACTAAAGTAGC
3530 AAATCTTTAT
Statistics
Matches: 79, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
100 21 0.27
101 58 0.73
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (100 bp):
TCCCTAAAGTTACAGTGGAATGGAGTGAAGCCACAACACCAAATCCTATATCCCTAAAGTTACAA
GGATCAAATTAAAACTAAAGTAGCGGATCTCAATC
Found at i:3502 original size:50 final size:50
Alignment explanation
Indices: 3296--3501 Score: 200
Period size: 50 Copynumber: 4.1 Consensus size: 50
3286 AATCTTCTTG
** *
3296 AAGTTACAGAAGAATGGAGTGAAGTTACAACACCAAATCCTATATCCCTA
1 AAGTTACAGTGGAATGGAGTGAAGCTACAACACCAAATCCTATATCCCTA
3346 AAGTTACAGTGGAATGGAGTGAAGCTACAACACCAAATCCTATATCCCTA
1 AAGTTACAGTGGAATGGAGTGAAGCTACAACACCAAATCCTATATCCCTA
** * * * * * ** * *
3396 AAGTTACAGTGG-ATCAAATTAAAACTA-AAGTAGCGGATCTCAATCTCCCTA
1 AAGTTACAGTGGAAT-GGAGTGAAGCTACAA-CACCAAATC-CTATATCCCTA
** * * *
3447 AAGTTGTAGTGGAATGGAGTGAAGCCACAACACCATATCCTATATCCCTG
1 AAGTTACAGTGGAATGGAGTGAAGCTACAACACCAAATCCTATATCCCTA
3497 AAGTT
1 AAGTT
3502 GCAAGGATCG
Statistics
Matches: 122, Mismatches: 29, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
49 4 0.03
50 84 0.69
51 30 0.25
52 4 0.03
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (50 bp):
AAGTTACAGTGGAATGGAGTGAAGCTACAACACCAAATCCTATATCCCTA
Found at i:3596 original size:100 final size:100
Alignment explanation
Indices: 3365--4104 Score: 604
Period size: 100 Copynumber: 7.4 Consensus size: 100
3355 TGGAATGGAG
* * * * * * * *
3365 TGAAGCTACAACACCAAATCCTATATCCCTAAAGTTACAGTGGATCAAATTAAAACTAAAGTAGC
1 TGAAGTTACAACATCAAATCCTATATCCCTGAAGTTGCA-AGGATCAGATTAAAGCTACAGTAGC
** ** * * *
3430 GGATCTCAATCTCCCTAAAGTTGTAGT-G-G-AATGGA
65 AAATCTTTATCTCTCTAAAGATGCAGTAGAGCAA--GA
** * *
3465 GTGAAGCCACAACACCATATCCTATATCCCTGAAGTTGCAAGGATC-GAATTAAAGCTACAGTAG
1 -TGAAGTTACAACATCAAATCCTATATCCCTGAAGTTGCAAGGATCAG-ATTAAAGCTACAGTAG
* * *
3529 CAAATCTTTATCTCTTTGAAGTTGCAGTAGAGCAAGA
64 CAAATCTTTATCTCTCTAAAGATGCAGTAGAGCAAGA
* ** * * * * * * *
3566 TGAAGCTACCGCATCAAATCTTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGCTATAGAAGC
1 TGAAGTTACAACATCAAATCCTATATCCCTGAAGTTGCA-AGGATCAGATTAAAGCTACAGTAGC
* *
3631 AAAT-TTTATCT-TCCTGAAGATGCAGTAGAGAAAGA
65 AAATCTTTATCTCT-CTAAAGATGCAGTAGAGCAAGA
** * * * *
3666 TGAAGTTATTACATCAAATCCTATATCCCTGAAGTTGCAGGGATCAAATTAAAACTATAGTAGCA
1 TGAAGTTACAACATCAAATCCTATATCCCTGAAGTTGCAAGGATCAGATTAAAGCTACAGTAGCA
*
3731 AATCTTTATCTCTCTGAAGATGCAGTAGAGCAAGA
66 AATCTTTATCTCTCTAAAGATGCAGTAGAGCAAGA
* * * * * * * *
3766 TGAAGCTACAACATGAAATCCTATACCCCTGAAGTTG-TAGTTGGTCAGATTGAAGCTATAGAAG
1 TGAAGTTACAACATCAAATCCTATATCCCTGAAGTTGCAAG--GATCAGATTAAAGCTACAGTAG
*
3830 CAAATC-TTATCTC-CTTAAAGATGCAGTGGAGCAAGA
64 CAAATCTTTATCTCTC-TAAAGATGCAGTAGAGCAAGA
* * * * ** *
3866 TGAAGTTACAACATCAAATCCTATATCCCTAAAGTTGTAGGGAT-TGAATTAAAAATACAGTATC
1 TGAAGTTACAACATCAAATCCTATATCCCTGAAGTTGCAAGGATCAG-ATTAAAGCTACAGTAGC
* * * *
3930 AAATCTTTATCTCTTTAAAGATGTAATAAAGCAAGA
65 AAATCTTTATCTCTCTAAAGATGCAGTAGAGCAAGA
* * * ** * *
3966 TGAAGTTACAACATCAAATCCTACACCCCTGAAGTTACCGTGGGTCAGATTGAAGCTACA-TGAG
1 TGAAGTTACAACATCAAATCCTATATCCCTGAAGTT-GCAAGGATCAGATTAAAGCTACAGT-AG
* * *
4030 CAAATC-TTATCTCCCTAAAGATGTAGTGGAGCAAGA
64 CAAATCTTTATCTCTCTAAAGATGCAGTAGAGCAAGA
* * * *
4066 TGAAATTACGACATCAAATCTTATATCCATGAAGTTGCA
1 TGAAGTTACAACATCAAATCCTATATCCCTGAAGTTGCA
4105 GTTGATTGAA
Statistics
Matches: 517, Mismatches: 103, Indels: 40
0.78 0.16 0.06
Matches are distributed among these distances:
98 1 0.00
99 45 0.09
100 362 0.70
101 104 0.20
102 3 0.01
103 2 0.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (100 bp):
TGAAGTTACAACATCAAATCCTATATCCCTGAAGTTGCAAGGATCAGATTAAAGCTACAGTAGCA
AATCTTTATCTCTCTAAAGATGCAGTAGAGCAAGA
Found at i:3599 original size:50 final size:50
Alignment explanation
Indices: 3545--3902 Score: 214
Period size: 50 Copynumber: 7.2 Consensus size: 50
3535 TTTATCTCTT
**
3545 TGAAGTTGCAGTAGAGCAAGATGAAGCTACCGCATCAAATCTTATACCCC
1 TGAAGTTGCAGTAGAGCAAGATGAAGCTATAGCATCAAATCTTATACCCC
* * * * *
3595 TGAAGTTGCAGT-GGGTC-AGATTGAAGCTATAGAAGCAAATTTTAT-CTTCC
1 TGAAGTTGCAGTAGAG-CAAGA-TGAAGCTATAGCATCAAATCTTATAC-CCC
* * * * *
3645 TGAAGATGCAGTAGAGAAAGATGAAGTTATTA-CATCAAATCCTATATCCC
1 TGAAGTTGCAGTAGAGCAAGATGAAGCTA-TAGCATCAAATCTTATACCCC
* * * * * * *
3695 TGAAGTTGCAG-GGATCAA-ATTAAAACTATAGTAGCAAATCTT-TATCTCTC
1 TGAAGTTGCAGTAGAGCAAGA-TGAAGCTATAGCATCAAATCTTATA-C-CCC
* * * * *
3745 TGAAGATGCAGTAGAGCAAGATGAAGCTACAACATGAAATCCTATACCCC
1 TGAAGTTGCAGTAGAGCAAGATGAAGCTATAGCATCAAATCTTATACCCC
* * * * *
3795 TGAAGTTGTAGTTG-GTC-AGATTGAAGCTATAGAAGCAAATCTTAT-CTCCT
1 TGAAGTTGCAGTAGAG-CAAGA-TGAAGCTATAGCATCAAATCTTATAC-CCC
* * * * * * * *
3845 TAAAGATGCAGTGGAGCAAGATGAAGTTACAACATCAAATCCTATATCCC
1 TGAAGTTGCAGTAGAGCAAGATGAAGCTATAGCATCAAATCTTATACCCC
*
3895 TAAAGTTG
1 TGAAGTTG
3903 TAGGGATTGA
Statistics
Matches: 224, Mismatches: 64, Indels: 40
0.68 0.20 0.12
Matches are distributed among these distances:
48 5 0.02
49 28 0.12
50 157 0.70
51 31 0.14
52 3 0.01
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (50 bp):
TGAAGTTGCAGTAGAGCAAGATGAAGCTATAGCATCAAATCTTATACCCC
Found at i:3826 original size:200 final size:200
Alignment explanation
Indices: 3365--4125 Score: 882
Period size: 200 Copynumber: 3.8 Consensus size: 200
3355 TGGAATGGAG
* * * * * * * * * *
3365 TGAAGCTACAACACCAAATCCTATATCCCTAAAGTTACAGTGGATCAAATTAAAACTAAAGTAGC
1 TGAAGCTACAACATCAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGCTATAGAAGC
** * * * * * ** * *
3430 GGATCTCAATCTCCCTAAAGTTGTAGTGGA--ATGGAGTGAAGCCACAACACCATATCCTATATC
66 AAATCT-TATCTTCCTAAAGATGCAGTGGAGCA-AGA-TGAAGTTACAACATCAAATCCTATATC
* * *
3493 CCTGAAGTTGCAAGGATCGAATTAAAGCTACAGTAGCAAATCTTTATCTCTTTGAAGTTGCAGTA
128 CCTGAAGTTGCAGGGATCGAATTAAAACTACAGTAGCAAATCTTTATCTCTTTGAAGATGCAGTA
3558 GAGCAAGA
193 GAGCAAGA
** *
3566 TGAAGCTACCGCATCAAATCTTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGCTATAGAAGC
1 TGAAGCTACAACATCAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGCTATAGAAGC
* * * * **
3631 AAATTTTATCTTCCTGAAGATGCAGTAGAGAAAGATGAAGTTATTACATCAAATCCTATATCCCT
66 AAATCTTATCTTCCTAAAGATGCAGTGGAGCAAGATGAAGTTACAACATCAAATCCTATATCCCT
* * *
3696 GAAGTTGCAGGGATCAAATTAAAACTATAGTAGCAAATCTTTATCTCTCTGAAGATGCAGTAGAG
131 GAAGTTGCAGGGATCGAATTAAAACTACAGTAGCAAATCTTTATCTCTTTGAAGATGCAGTAGAG
3761 CAAGA
196 CAAGA
* * *
3766 TGAAGCTACAACATGAAATCCTATACCCCTGAAGTTGTAGTTGGTCAGATTGAAGCTATAGAAGC
1 TGAAGCTACAACATCAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGCTATAGAAGC
3831 AAATCTTATC-TCCTTAAAGATGCAGTGGAGCAAGATGAAGTTACAACATCAAATCCTATATCCC
66 AAATCTTATCTTCC-TAAAGATGCAGTGGAGCAAGATGAAGTTACAACATCAAATCCTATATCCC
* * * * * * * * *
3895 TAAAGTTGTAGGGATTGAATTAAAAATACAGTATCAAATCTTTATCTCTTTAAAGATGTAATAAA
130 TGAAGTTGCAGGGATCGAATTAAAACTACAGTAGCAAATCTTTATCTCTTTGAAGATGCAGTAGA
3960 GCAAGA
195 GCAAGA
* * * * *
3966 TGAAGTTACAACATCAAATCCTACACCCCTGAAGTTACCGTGGGTCAGATTGAAGCTACATG-AG
1 TGAAGCTACAACATCAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGCTATA-GAAG
* * * * * *
4030 CAAATCTTATCTCCCTAAAGATGTAGTGGAGCAAGATGAAATTACGACATCAAATCTTATATCCA
65 CAAATCTTATCTTCCTAAAGATGCAGTGGAGCAAGATGAAGTTACAACATCAAATCCTATATCCC
* * *
4095 TGAAGTTGCAGTTGATTGAATTGAAACTACA
130 TGAAGTTGCAG-GGATCGAATTAAAACTACA
4126 ATAAGCAAGT
Statistics
Matches: 476, Mismatches: 78, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
199 3 0.01
200 396 0.83
201 76 0.16
202 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (200 bp):
TGAAGCTACAACATCAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGCTATAGAAGC
AAATCTTATCTTCCTAAAGATGCAGTGGAGCAAGATGAAGTTACAACATCAAATCCTATATCCCT
GAAGTTGCAGGGATCGAATTAAAACTACAGTAGCAAATCTTTATCTCTTTGAAGATGCAGTAGAG
CAAGA
Found at i:3941 original size:300 final size:301
Alignment explanation
Indices: 3365--4125 Score: 738
Period size: 300 Copynumber: 2.5 Consensus size: 301
3355 TGGAATGGAG
* * *
3365 TGAAGCTACAACACCAAATCCTATATCCCTAAAGTTACAGTGGATCAAATTAAAACTAAAGTAGC
1 TGAAGTTACAACATCAAATCCTATATCCCTGAAGTTACAGTGGATCAAATTAAAACTAAAGTAGC
** ** * * * *
3430 GGATCTCAATCTCCCTAAAGTTGTAGTG-G-AATGGAGTGAAGCCACAACACCATATCCTATATC
66 AAATCTTTATCTCCCTAAAGATGTAGTGAGCAA--GA-TGAAGCTACAACATCAAATCCTATATC
* * * *
3493 CCTGAAGTTGCAAG--GATCGAATTAAAGCTACAGTAGCAAATCTTTATCTCTTTGAAGTTGCAG
128 CCTGAAGTTG-AAGTTGATCGAATTAAAGCTACAGAAGCAAATCTTTATCTCCTTAAAGATGCAG
** * * * *
3556 TAGAGCAAGATGAAGCTACCGCATCAAATCTTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAG
192 TAGAGCAAGATGAAGCTACAACATCAAATCCTATACCCCTAAAGTTGCAGTGGGTCAGATTAAAA
* * * * *
3621 CTATAGAAGCAAATTTTATCT-TCCTGAAGATGCAGTAGAGAAAGA
257 ATACAGAAGCAAATTTTATCTCT-CTAAAGATGCAATAAAGAAAGA
** * *
3666 TGAAGTTATTACATCAAATCCTATATCCCTGAAGTTGCAG-GGATCAAATTAAAACTATAGTAGC
1 TGAAGTTACAACATCAAATCCTATATCCCTGAAGTTACAGTGGATCAAATTAAAACTAAAGTAGC
* * * * *
3730 AAATCTTTATCTCTCTGAAGATGCAGTAGAGCAAGATGAAGCTACAACATGAAATCCTATACCCC
66 AAATCTTTATCTCCCTAAAGATGTAGT-GAGCAAGATGAAGCTACAACATCAAATCCTATATCCC
* * * * *
3795 TGAAGTTGTAGTTGGTC-AGATTGAAGCTATAGAAGCAAATC-TTATCTCCTTAAAGATGCAGTG
130 TGAAGTTGAAGTTGATCGA-ATTAAAGCTACAGAAGCAAATCTTTATCTCCTTAAAGATGCAGTA
* * * * *
3858 GAGCAAGATGAAGTTACAACATCAAATCCTATATCCCTAAAGTTGTAG-GGAT-TGAATTAAAAA
194 GAGCAAGATGAAGCTACAACATCAAATCCTATACCCCTAAAGTTGCAGTGGGTCAG-ATTAAAAA
* * * * *
3921 TACAGTATCAAATCTTTATCTCTTTAAAGATGTAATAAAGCAAGA
258 TACAGAAGCAAAT-TTTATCTCTCTAAAGATGCAATAAAGAAAGA
* * * * * * * *
3966 TGAAGTTACAACATCAAATCCTACACCCCTGAAGTTACCGTGGGTCAGATTGAAGCTACA-TGAG
1 TGAAGTTACAACATCAAATCCTATATCCCTGAAGTTACAGTGGATCAAATTAAAACTAAAGT-AG
** * *
4030 CAAATC-TTATCTCCCTAAAGATGTAGTGGAGCAAGATGAAATTACGACATCAAATCTTATATCC
65 CAAATCTTTATCTCCCTAAAGATGTAGT-GAGCAAGATGAAGCTACAACATCAAATCCTATATCC
* * *
4094 ATGAAGTTGCAGTTGATTGAATTGAAA-CTACA
129 CTGAAGTTGAAGTTGATCGAATT-AAAGCTACA
4126 ATAAGCAAGT
Statistics
Matches: 370, Mismatches: 77, Indels: 27
0.78 0.16 0.06
Matches are distributed among these distances:
298 1 0.00
299 20 0.05
300 261 0.71
301 85 0.23
302 1 0.00
303 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (301 bp):
TGAAGTTACAACATCAAATCCTATATCCCTGAAGTTACAGTGGATCAAATTAAAACTAAAGTAGC
AAATCTTTATCTCCCTAAAGATGTAGTGAGCAAGATGAAGCTACAACATCAAATCCTATATCCCT
GAAGTTGAAGTTGATCGAATTAAAGCTACAGAAGCAAATCTTTATCTCCTTAAAGATGCAGTAGA
GCAAGATGAAGCTACAACATCAAATCCTATACCCCTAAAGTTGCAGTGGGTCAGATTAAAAATAC
AGAAGCAAATTTTATCTCTCTAAAGATGCAATAAAGAAAGA
Found at i:4118 original size:100 final size:99
Alignment explanation
Indices: 3473--4208 Score: 613
Period size: 100 Copynumber: 7.4 Consensus size: 99
3463 GAGTGAAGCC
* * *
3473 ACAACACCATATCCTATATCCCTGAAGTTGCAAG-GA-TCGAATTAAAGCTACAGTAGCAAATCT
1 ACAACATCAAATCCTATATCCCTGAAGTTGC-AGTGATTC-AATTGAAGCTACAGTAGCAAATC-
** * *
3536 TTATCTCTTTGAAGTTGCAGTAGAGCAAGATGAAGCT
63 TTATCTCCCTGAAGATGCAGTAGAGCAAGATGAAGTT
** * * ** * * *
3573 ACCGCATCAAATCTTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGCTATAGAAGCAAATTTT
1 ACAACATCAAATCCTATATCCCTGAAGTTGCAGTGATTCA-ATTGAAGCTACAGTAGCAAATCTT
* *
3638 ATCTTCCTGAAGATGCAGTAGAGAAAGATGAAGTT
65 ATCTCCCTGAAGATGCAGTAGAGCAAGATGAAGTT
** * * * *
3673 ATTACATCAAATCCTATATCCCTGAAGTTGCAGGGA-TCAAATTAAAACTATAGTAGCAAATCTT
1 ACAACATCAAATCCTATATCCCTGAAGTTGCAGTGATTC-AATTGAAGCTACAGTAGCAAATC-T
* *
3737 TATCTCTCTGAAGATGCAGTAGAGCAAGATGAAGCT
64 TATCTCCCTGAAGATGCAGTAGAGCAAGATGAAGTT
* * * * * *
3773 ACAACATGAAATCCTATACCCCTGAAGTTGTAGTTG-GTCAGATTGAAGCTATAGAAGCAAATCT
1 ACAACATCAAATCCTATATCCCTGAAGTTGCAG-TGATTCA-ATTGAAGCTACAGTAGCAAATCT
* * *
3837 TATCTCCTTAAAGATGCAGTGGAGCAAGATGAAGTT
64 TATCTCCCTGAAGATGCAGTAGAGCAAGATGAAGTT
* * * * * ** *
3873 ACAACATCAAATCCTATATCCCTAAAGTTGTAGGGATTGAATTAAAAATACAGTATCAAATCTTT
1 ACAACATCAAATCCTATATCCCTGAAGTTGCAGTGATTCAATTGAAGCTACAGTAGCAAATC-TT
** * * * *
3938 ATCTCTTTAAAGATGTAATAAAGCAAGATGAAGTT
65 ATCTCCCTGAAGATGCAGTAGAGCAAGATGAAGTT
* * * * **
3973 ACAACATCAAATCCTACACCCCTGAAGTTACCGTGGGTCAGATTGAAGCTACA-TGAGCAAATCT
1 ACAACATCAAATCCTATATCCCTGAAGTTGCAGTGATTCA-ATTGAAGCTACAGT-AGCAAATCT
* * * *
4037 TATCTCCCTAAAGATGTAGTGGAGCAAGATGAAATT
64 TATCTCCCTGAAGATGCAGTAGAGCAAGATGAAGTT
* * * * * * * *
4073 ACGACATCAAATCTTATATCCATGAAGTTGCAGTTGATTGAATTGAAACTACAATAAGCAAGTCC
1 ACAACATCAAATCCTATATCCCTGAAGTTGCAG-TGATTCAATTGAAGCTACAGT-AGCAAATCT
* * * *
4138 TATCTCCCTGAAGATACAGT-GAAGTAAAAT-AAATT
64 TATCTCCCTGAAGATGCAGTAG-AGCAAGATGAAGTT
* * * * *
4173 ACAATATCAAATCCTATCTTCCTAAAATTGCAGTGA
1 ACAACATCAAATCCTATATCCCTGAAGTTGCAGTGA
4209 AGTTGATAAA
Statistics
Matches: 511, Mismatches: 110, Indels: 31
0.78 0.17 0.05
Matches are distributed among these distances:
99 42 0.08
100 376 0.74
101 93 0.18
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (99 bp):
ACAACATCAAATCCTATATCCCTGAAGTTGCAGTGATTCAATTGAAGCTACAGTAGCAAATCTTA
TCTCCCTGAAGATGCAGTAGAGCAAGATGAAGTT
Done.