Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013754.1 Kokia drynarioides strain JFW-HI SEQ_128782, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9571
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.32


Found at i:2111 original size:27 final size:27

Alignment explanation


    Indices: 2076--2130  Score: 76
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       2066 ACACCCCTTA

                                        
       2076 GTGCAGCCACTT-GATATTCCTCCATTG
          1 GTGCAGCCACTTCG-TATTCCTCCATTG

                *          *           
       2103 GTGCCGCCACTTCGTGTTCCTCCATTG
          1 GTGCAGCCACTTCGTATTCCTCCATTG

             
       2130 G
          1 G

       2131 GTGTCAGGTA


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  27   24  0.96
  28    1  0.04

ACGTcount: A:0.13, C:0.33, G:0.22, T:0.33


Consensus pattern (27 bp):   
GTGCAGCCACTTCGTATTCCTCCATTG
Done.